Trying custom images

naobservatory · Nov 19, 2024 · 65e5333 · 65e5333
1 parent fbb9d0b
commit 65e5333
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Showing 3 changed files with 9 additions and 4 deletions.
diff --git a/configs/containers.config b/configs/containers.config
@@ -1,10 +1,15 @@
 // Specify Docker containers for workflow processes
 process {
     withLabel: base {
-//        container = "eclipse/alpine_jdk8:latest"
-        container = "community.wave.seqera.io/library/curl:8.10.1--43150f2d543ef413"
+        container = "eclipse/alpine_jdk8:latest"
         // NB: As of 2024-07-01, no more specific tag available
     }
+    withLabel: curl {
+        container = "community.wave.seqera.io/library/curl:8.10.1--43150f2d543ef413"
+    }
+    withLabel: unzip {
+        container = "community.wave.seqera.io/library/unzip:6.0--0e729f0c20458893"
+    }
     withLabel: MultiQC {
         // NB: As of 2024-07-01, newer versions currently cause errors
         container = "multiqc/multiqc:v1.21"

diff --git a/modules/local/downloadVirusHostDB/main.nf b/modules/local/downloadVirusHostDB/main.nf
@@ -1,7 +1,7 @@
 // Download entire VirusHostDB
 process DOWNLOAD_VIRUS_HOST_DB {
     label "single"
-    label "base"
+    label "curl"
     input:
         val(virus_host_db_url)
     output:

diff --git a/modules/local/extractNcbiTaxonomy/main.nf b/modules/local/extractNcbiTaxonomy/main.nf
@@ -1,6 +1,6 @@
 // Extract NCBI taxonomy archive and access nodes and names files
 process EXTRACT_NCBI_TAXONOMY {
-    label "base"
+    label "unzip"
     label "single"
     input:
         path(taxonomy_zip)