Updated the RUN workflow test to use the new index

naobservatory · Jan 30, 2025 · 4826062 · 4826062
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,5 @@
 # v2.7.0.1
-- Fixing mislabeled index that causes the pipeline to fail, and added `adapters` param to the index config file used to run our tests
+- Fixing mislabeled index that causes the pipeline to fail, added `adapters` param to the index config file used to run our tests, updated run test to use new index
 
 # v2.7.0.0
 - Implemented masking of viral genome reference in index workflow with MASK_GENOME_FASTA to remove adapter, low-entropy and repeat sequences.

diff --git a/tests/run.config b/tests/run.config
@@ -12,7 +12,7 @@ params {
 
     // Directories
     base_dir = "./" // Parent for working and output directories (can be S3)
-    ref_dir = "s3://nao-testing/index-test/output" // Reference/index directory (generated by index workflow)
+    ref_dir = "s3://nao-testing/index/20250130/output/" // Reference/index directory (generated by index workflow)
 
     // Files
     sample_sheet = "${projectDir}/test-data/samplesheet.csv" // Path to library TSV