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End-to-end MGS workflow test for single-end run

Replace generate_samplesheet.sh with generate_samplesheet.py #77

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Replace generate_samplesheet.sh with generate_samplesheet.py

Replace generate_samplesheet.sh with generate_samplesheet.py #77

Run time

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Job Run time
test-run-dev-se
8m 52s
8m 52s