simplify env

morinlab · Dec 20, 2024 · 24add14 · 24add14
1 parent da703d0
commit 24add14
Showing 1 changed file with 10 additions and 219 deletions.
diff --git a/envs/r.yaml b/envs/r.yaml
@@ -3,224 +3,15 @@ channels:
   - conda-forge
   - nodefaults
 dependencies:
-  - _libgcc_mutex=0.1
-  - _openmp_mutex=4.5
-  - _r-mutex=1.0.1
-  - binutils_impl_linux-64=2.40
-  - binutils_linux-64=2.40
-  - bwidget=1.9.14
-  - bzip2=1.0.8
-  - c-ares=1.28.1
-  - ca-certificates=2024.7.4
-  - cairo=1.16.0
-  - cmake=3.30.0
-  - curl=8.8.0
-  - expat=2.6.2
-  - font-ttf-dejavu-sans-mono=2.37
-  - font-ttf-inconsolata=3.000
-  - font-ttf-source-code-pro=2.038
-  - font-ttf-ubuntu=0.83
-  - fontconfig=2.14.2
-  - fonts-conda-ecosystem=1
-  - fonts-conda-forge=1
-  - freetype=2.12.1
-  - fribidi=1.0.10
-  - gcc_impl_linux-64=13.2.0
-  - gcc_linux-64=13.2.0
-  - gettext=0.22.5
-  - gettext-tools=0.22.5
-  - gfortran_impl_linux-64=13.2.0
-  - graphite2=1.3.13
-  - gsl=2.7
-  - gxx_impl_linux-64=13.2.0
-  - harfbuzz=7.3.0
-  - icu=72.1
-  - kernel-headers_linux-64=2.6.32
-  - keyutils=1.6.1
-  - krb5=1.21.3
-  - ld_impl_linux-64=2.40
-  - lerc=4.0.0
-  - libasprintf=0.22.5
-  - libasprintf-devel=0.22.5
-  - libblas=3.9.0
-  - libcblas=3.9.0
-  - libcurl=8.8.0
-  - libdeflate=1.18
-  - libedit=3.1.20191231
-  - libev=4.33
-  - libexpat=2.6.2
-  - libffi=3.4.2
-  - libgcc-devel_linux-64=13.2.0
-  - libgcc-ng=14.1.0
-  - libgettextpo=0.22.5
-  - libgettextpo-devel=0.22.5
-  - libgfortran-ng=14.1.0
-  - libgfortran5=14.1.0
-  - libgit2=1.5.1
-  - libglib=2.78.1
-  - libgomp=14.1.0
-  - libiconv=1.17
-  - libjpeg-turbo=2.1.5.1
-  - liblapack=3.9.0
-  - libnghttp2=1.58.0
-  - libnsl=2.0.1
-  - libopenblas=0.3.27
-  - libpng=1.6.43
-  - libsanitizer=13.2.0
-  - libsqlite=3.46.0
-  - libssh2=1.11.0
-  - libstdcxx-devel_linux-64=13.2.0
-  - libstdcxx-ng=14.1.0
-  - libtiff=4.5.1
-  - libuuid=2.38.1
-  - libuv=1.48.0
-  - libwebp-base=1.4.0
-  - libxcb=1.15
-  - libxcrypt=4.4.36
-  - libxml2=2.11.5
-  - libzlib=1.3.1
-  - make=4.3
-  - mysql-common=8.3.0
-  - mysql-connector-c=6.1.11
-  - mysql-libs=8.3.0
-  - mysqlclient=2.2.4
-  - ncurses=6.5
-  - openssl=3.3.1
-  - pandoc=2.19.2
-  - pango=1.50.14
-  - pcre2=10.40
-  - pip=24.0
-  - pixman=0.43.2
-  - pthread-stubs=0.4
-  - r-askpass=1.1
-  - r-assertthat=0.2.1
-  - r-backports=1.4.1
+  - cmake
+  - r-biocmanager
   - r-base=4.1.3
-  - r-base64enc=0.1_3
-  - r-biocmanager=1.30.21
-  - r-brew=1.0_8
-  - r-brio=1.1.3
-  - r-bslib=0.5.0
-  - r-cachem=1.0.8
-  - r-callr=3.7.3
-  - r-cli=3.6.1
-  - r-clipr=0.8.0
-  - r-commonmark=1.9.0
-  - r-cpp11=0.4.7
-  - r-crayon=1.5.2
-  - r-credentials=1.3.2
-  - r-curl=4.3.3
-  - r-dbi=1.1.3
-  - r-desc=1.4.2
-  - r-devtools=2.4.5
-  - r-diffobj=0.3.5
-  - r-digest=0.6.31
-  - r-downlit=0.4.2
-  - r-ellipsis=0.3.2
-  - r-evaluate=0.21
-  - r-fansi=1.0.4
-  - r-fastmap=1.1.1
-  - r-fontawesome=0.5.1
-  - r-fs=1.6.2
-  - r-gert=1.9.2
-  - r-gh=1.4.0
-  - r-git2r=0.31.0
-  - r-gitcreds=0.1.2
-  - r-glue=1.6.2
-  - r-highr=0.10
-  - r-htmltools=0.5.5
-  - r-htmlwidgets=1.6.2
-  - r-httpuv=1.6.11
-  - r-httr=1.4.6
-  - r-httr2=0.2.3
-  - r-ini=0.3.1
-  - r-jquerylib=0.1.4
-  - r-jsonlite=1.8.5
-  - r-knitr=1.43
-  - r-later=1.3.1
-  - r-lattice=0.21_8
-  - r-lifecycle=1.0.3
-  - r-magrittr=2.0.3
-  - r-mass=7.3_58.3
-  - r-matrix=1.5_4.1
-  - r-matrixmodels=0.5_0
-  - r-memoise=2.0.1
-  - r-mime=0.12
-  - r-miniui=0.1.1.1
-  - r-openssl=2.0.6
-  - r-pillar=1.9.0
+  - libxml2
+  - r-devtools
+  - r-git2r
   - r-pbkrtest=0.5.2
-  - r-pkgbuild=1.4.0
-  - r-pkgconfig=2.0.3
-  - r-pkgdown=2.0.7
-  - r-pkgload=1.3.2
-  - r-praise=1.0.0
-  - r-prettyunits=1.1.1
-  - r-processx=3.8.1
-  - r-profvis=0.3.8
-  - r-promises=1.2.0.1
-  - r-ps=1.7.5
-  - r-purrr=1.0.1
-  - r-r6=2.5.1
-  - r-ragg=1.2.5
-  - r-rappdirs=0.3.3
-  - r-rcmdcheck=1.4.0
-  - r-rcpp=1.0.10
-  - r-rematch2=2.1.2
-  - r-remotes=2.4.2
-  - r-rlang=1.1.1
-  - r-rmarkdown=2.22
-  - r-rmysql=0.10.25
-  - r-roxygen2=7.2.3
-  - r-rprojroot=2.0.3
-  - r-rstudioapi=0.14
-  - r-rversions=2.1.2
-  - r-sass=0.4.6
-  - r-sessioninfo=1.2.2
-  - r-shiny=1.7.4
-  - r-sourcetools=0.1.7_1
-  - r-stringi=1.7.12
-  - r-stringr=1.5.0
-  - r-sys=3.4.2
-  - r-systemfonts=1.0.4
-  - r-testthat=3.1.8
-  - r-textshaping=0.3.6
-  - r-tibble=3.2.1
-  - r-tinytex=0.45
-  - r-urlchecker=1.0.1
-  - r-usethis=2.2.0
-  - r-utf8=1.2.3
-  - r-vctrs=0.6.2
-  - r-waldo=0.5.1
-  - r-whisker=0.4.1
-  - r-withr=2.5.0
-  - r-xfun=0.39
-  - r-xml2=1.3.4
-  - r-xopen=1.0.0
-  - r-xtable=1.8_4
-  - r-yaml=2.3.7
-  - r-zip=2.3.0
-  - readline=8.2
-  - rhash=1.4.4
-  - sed=4.8
-  - setuptools=70.1.1
-  - sysroot_linux-64=2.12
-  - tk=8.6.13
-  - tktable=2.10
-  - tzdata=2024a
-  - wheel=0.43.0
-  - xorg-kbproto=1.0.7
-  - xorg-libice=1.1.1
-  - xorg-libsm=1.2.4
-  - xorg-libx11=1.8.9
-  - xorg-libxau=1.0.11
-  - xorg-libxdmcp=1.1.3
-  - xorg-libxext=1.3.4
-  - xorg-libxrender=0.9.11
-  - xorg-libxt=1.3.0
-  - xorg-renderproto=0.11.1
-  - xorg-xextproto=7.3.0
-  - xorg-xproto=7.0.31
-  - xz=5.2.6
-  - zlib=1.3.1
-  - zstd=1.5.6
+  - mysqlclient
+  - r-rmysql
+  - r-matrix
+  - r-matrixmodels
+  - r-mixtools