Merge pull request #56 from RoanKanninga/main

new ngs-utils + updated checksum ngs_dna, concordancecheck and ngs_automated
molgenis · Oct 30, 2023 · e134f12 · e134f12
2 parents 3dc324e + 35d0a73
commit e134f12
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Showing 4 changed files with 34 additions and 3 deletions.
diff --git a/c/ConcordanceCheck/ConcordanceCheck-2.2.1.eb b/c/ConcordanceCheck/ConcordanceCheck-2.2.1.eb
@@ -13,7 +13,7 @@ easyblock = 'Tarball'
 source_urls = [('http://github.com/molgenis/%s/archive/' % (name))]
 sources = [('%s.tar.gz' % (version))]
 
-checksums = ['4b51ee0963ab9221383489c96b190ce025ca2687e88b8afd5a64e0b013ca5990']
+checksums = ['50db0134a52fbf11528d75393ec2ca5b151b5d687fb8b437a1c9ce3b57afae79']
 
 dependencies = [
        ('CompareGenotypeCalls', '1.8.1', '-Java-8-LTS'),

diff --git a/n/NGS_Automated/NGS_Automated-4.1.0-bare.eb b/n/NGS_Automated/NGS_Automated-4.1.0-bare.eb
@@ -14,7 +14,7 @@ easyblock = 'Tarball'
 source_urls = [('http://github.com/molgenis/%s/archive/' % (name))]
 sources = [('%s.tar.gz' % (version))]
 
-checksums = ['3b5ac077fee4e8e3a646d54f7f704428fd2328d481958a83e14df64444381bcd']
+checksums = ['66677b49779f69fc30146956d8e2cb498fbc7c84c4b0ffa34f5b76b915ac1443']
 
 sanity_check_paths = {
     'files': [

diff --git a/n/NGS_DNA/NGS_DNA-4.2.2-foss-2022a.eb b/n/NGS_DNA/NGS_DNA-4.2.2-foss-2022a.eb
@@ -18,7 +18,7 @@ py2ver = '2.7.16'
 #
 source_urls = [('http://github.com/molgenis/%s/archive/' % (name))]
 sources = [('%s.tar.gz' % (version))]
-checksums = ['239575a0b2ae1a1f4d620625906b8209eac6db62c37a5b2ff74b46bb01a5317f']
+checksums = ['38f98f783d9a1b3089c376e682793be9924ce70a391bf0bc2489bdcf0b1e4d7b']
 
 #
 # Dependencies.

diff --git a/n/ngs-utils/ngs-utils-23.10.1.eb b/n/ngs-utils/ngs-utils-23.10.1.eb
@@ -0,0 +1,31 @@
+name = 'ngs-utils'
+version = '23.10.1'
+
+homepage = 'https://github.com/molgenis/ngs-utils'
+description = """Collection of notes and scripts related to NGS """
+
+toolchain = SYSTEM
+easyblock = 'PackedBinary'
+
+#
+# Example URL: https://github.com/molgenis/ngs-utils/archive/23.02.1.tar.gz
+#
+source_urls = [('http://github.com/molgenis/ngs-utils/archive/%s/' % (version))]
+sources = [('%s.tar.gz' % (version))]
+
+checksums = ['7ab16288b41a663b66b98adfce7a736952967489eb406263ed3610dd3d45963d']
+
+postinstallcmds = [
+    'chmod -R 775 %(installdir)s/bin/*.sh',
+    'chmod -R 775 %(installdir)s/bin/*.bash',
+    'chmod -R 775 %(installdir)s/bin/*.pl',
+    'chmod -R 775 %(installdir)s/bin/*.py',
+    'chmod -R g+rwX,o+rX,o-w %(installdir)s/bin/*'
+]
+
+sanity_check_paths = {
+    'files': ['bin/pseudo_array.sh'],
+    'dirs': []
+}
+
+moduleclass = 'bio'