new Features
- XHMM
- Convading
- Manta
- compressing g.vcf files
New workflows and generatescripts
- reanalysis
- WGS reanalysis (including genotyping with old samples)
Differences:
- genotyping has compressed g.vcf file as input
- upgrade to GATK 3.6
- updated CoverageCalculations (fixing bedfile format issue, that there were no gene names in the output)
