Merge pull request #288 from molgenis/RoanKanninga-patch-1

added Targeted as being skipped for gender check
molgenis · Feb 23, 2022 · ce4d5a9 · ce4d5a9
2 parents 33e2e1c + cf84cf0
commit ce4d5a9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/protocols/GenderCalculate.sh b/protocols/GenderCalculate.sh
@@ -18,7 +18,7 @@
 
 module load "${picardVersion}"
 
-if [[ "${capturedIntervals}" == *"ONCO_v"* || "${capturedIntervals}" == *"wgs"* ]]
+if [[ "${capturedIntervals}" == *"ONCO_v"* || "${capturedIntervals}" == *"wgs"* || "${capturedIntervals}" == *"Targeted_v"*]]
 then
 	touch "${dedupBamMetrics}.noChrX"
 else