Releases: moka-guys/dnanexus_happy
Update app to use docker image in DNAnexus
Updated the app so it no longer pulls the hap.py-v0.3.9 image from docker hub. Instead the app now uses the hap.py-v0.3.9 saved image file in DNAnexus.
The app now prints the image tag in the job log.
update dnanexus instance type to v2
Merge pull request #36 from moka-guys/update_instance_type update instance type to v2 - fix #35 (#36)
Add skip flag
skip flag allows for app to be included in workflow. where skip = true the app closes without outputs, and without error. default skip = false.
Note in workflow may need to state output folder for multiqc
v1.4.0
This release adds support for genome build GRCh38
v1.3.1: Merge pull request #31 from moka-guys/graeme_dev
This release updates the runtime environment from Ubuntu 14.04, which is no longer supported, to Ubuntu 20.02. This fixes dependency issues which were preventing the app from working. This change also necessitated the following changes:
- tabix version upgraded to 1.10.2-3, the version available via apt-get on Ubuntu 20.04
- the legacy dx-docker utility, which is only supported on 14.04 runtime environments has been replaced with native docker commands.
v1.3
Removed --pass-only flag when running happy to prevent filtered variants being ignored completely. - The results are split into 'ALL' and 'PASS' rows.
Explicitly added flags for some hap.py settings (these were already on by default anyway so output not affected, but this makes it clearer that they are being used and mirrors the command run by the precisionFDA app)