FloPy optional dependency testing #532
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| # This workflow tests flopy with random subsets of optional dependencies. | |
| # Flopy should not crash due to the absence of any optional dependencies, | |
| # rather it should gracefully raise an ImportError if absent when needed. | |
| name: FloPy optional dependency testing | |
| on: | |
| schedule: | |
| - cron: '0 8 * * *' # run at 8 AM UTC (12 am PST) | |
| jobs: | |
| test: | |
| name: Test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| timeout-minutes: 10 | |
| env: | |
| PYTHON_VERSION: 3.9 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| optdeps: | |
| # - "all optional dependencies" | |
| - "no optional dependencies" | |
| - "some optional dependencies" | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Setup uv | |
| uses: astral-sh/setup-uv@v5 | |
| with: | |
| version: "0.5.18" | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version-file: pyproject.toml | |
| - name: Install Python dependencies | |
| run: | | |
| uv sync --extra test | |
| # Install optional dependencies according to matrix.optdeps. | |
| # If matrix.optdeps is "some" remove 3 optional dependencies | |
| # selected randomly using the current date as the seed. | |
| if [[ ! "${{ matrix.optdeps }}" == *"no"* ]]; then | |
| uv pip install ".[optional]" | |
| fi | |
| if [[ "${{ matrix.optdeps }}" == *"some"* ]]; then | |
| deps=$(sed '/optional =/,/]/!d' pyproject.toml | sed -e '1d;$d' -e 's/\"//g' -e 's/,//g' | tr -d ' ' | cut -f 1 -d ';') | |
| rmvd=$(echo $deps | tr ' ' '\n' | shuf --random-source <(yes date +%d.%m.%y) | head -n 3) | |
| echo "Removing optional dependencies: $rmvd" >> removed_dependencies.txt | |
| cat removed_dependencies.txt | |
| uv pip uninstall --yes $rmvd | |
| fi | |
| - name: Upload removed dependencies log | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: smoke-test-removed-dependencies | |
| path: ./removed_dependencies.txt | |
| - name: Install Modflow executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Smoke test (${{ matrix.optdeps }}) | |
| working-directory: autotest | |
| run: uv run pytest -v -n=auto -m "not regression and not example" --cov=flopy --cov-report=xml --durations=0 --keep-failed=.failed | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload failed test outputs | |
| uses: actions/upload-artifact@v4 | |
| if: failure() | |
| with: | |
| name: failed-smoke-${{ runner.os }}-${{ env.PYTHON_VERSION }} | |
| path: ./autotest/.failed/** | |