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add GHA to periodically update class subworkflows and open a PR #5

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@mirpedrol mirpedrol commented Nov 27, 2024

Added GHA to periodically update class subworkflows and open a PR with the changes
Updated modules and subworkflows to fix linting

Tests:

  • pre-commit is failing due to no endline in .nf.test files. This is fixed in .editorconfig but not applied to this PR tests until the .editorconfig file is merged. (passing locally)
  • linting is failing due to the "oneOf" under tool_selection section of the JSON schema, a PR is open to nf-core/tools to allow this case. (works locally) Fixed with v3.1.2, now tests are failing due to the template update.

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