This repository contains all source data and code for the analysis found in "The biomass composition of the oceans - a blueprint of our blue planet" by Yinon M. Bar-On and Ron Milo.
An index for the structure of this repository is given below:
-
data/| Source data used for estimating the total biomass of each kingdom in the ocean -
code/| Souce code in the form of Jupyter notebooks for estimating the total biomass of each kingdom in the ocean -
results/| Files and figures resulting from our analysis -
html/| HTML format of our Jupyter notebooks
In order to run the code in this repository, first intall the dependencies of the code. To install the dependencies run the following script:
sudo pip install -r requirements.txt
The code was tested on the following software versions:
- python 3.5.2
- ipython 5.5.0
- jupyter 1.0.0
- scipy 0.19.0
- pandas 0.21.0
- numpy 1.14.2
- gdal 1.11.3
- matplotlib 2.2.2
- openpyxl 2.5.0
Tested on Ubuntu versions 16.04 & 17.10