-
Notifications
You must be signed in to change notification settings - Fork 45
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Add files via upload Microsoft mandatory file remove zip file Code from BiomedParse Update README.md adding figure scripts improve readme Add files via upload Add inference code Update readme Add figure plots and readme ignore plots ignor large file ignore result Configure Git LFS and add large files Track large JSON files with LFS adding back results Add demo dataset Cleaned up a conda environment Update config with correct normalization Conda environment setup without MPI fixed typo fix target_dist.json fix target_dist.json Fix conda environment for clip Change utils folder to utilities folder Medical image preprocessing Update README with dataset list Fix formatting issue Update README.md Adds Usage and License Notices Update README.md Fix for compatible with numpy Update README.md
- Loading branch information
Theodore Zhao
committed
Nov 16, 2024
1 parent
df9353b
commit 9c00c75
Showing
1 changed file
with
3 additions
and
1 deletion.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1 +1,3 @@ | ||
{"CT-Abdomen": {"postcava": [[244.8001455798728, 5.314270814858824], [7.183679633251858, 5.168810995426391], [7.183679633251858, 5.168810995426391], [7.183679633251858, 5.168810995426391]], "aorta": [[570.5260544851909, 8.97527503179567], [3.3715049586348242, 1.4971164544774238], [3.3715049586348242, 1.4971164544774238], [3.3715049586348242, 1.4971164544774238]], "right kidney": [[831.8568013426873, 14.991866448573818], [4.970270375121704, 3.050385928796316], [4.970270375121704, 3.050385928796316], [4.970270375121704, 3.050385928796316]], "kidney": [[824.7288483151449, 17.740666994112335], [5.134294543833492, 3.188304874790919], [5.134294543833492, 3.188304874790919], [5.134294543833492, 3.188304874790919]], "left kidney": [[765.9269280548916, 14.314482540419498], [5.084499568327313, 3.2061871556243515], [5.084499568327313, 3.2061871556243515], [5.084499568327313, 3.2061871556243515]], "duodenum": [[121.5002253116006, 5.0616837393558045], [13.60882943690214, 15.313999640884173], [13.60882943690214, 15.313999640884173], [13.60882943690214, 15.313999640884173]], "pancreas": [[182.85416969377923, 6.9039775525067135], [17.489564177159146, 14.924761571311656], [17.489564177159146, 14.924761571311656], [17.489564177159146, 14.924761571311656]], "liver": [[481.5690096331249, 8.413924027868077], [6.047563882283547, 6.86712354789198], [6.047563882283547, 6.86712354789198], [6.047563882283547, 6.86712354789198]], "spleen": [[496.77984794364835, 8.498216025126785], [14.594250163059534, 10.71357260923987], [14.594250163059534, 10.71357260923987], [14.594250163059534, 10.71357260923987]], "stomach": [[137.7555592980079, 3.928159238756134], [5.978844398494112, 10.238758157160921], [5.978844398494112, 10.238758157160921], [5.978844398494112, 10.238758157160921]], "gallbladder": [[109.56988864543307, 3.4765854683723596], [32.35084093358493, 41.113482214152384], [32.35084093358493, 41.113482214152384], [32.35084093358493, 41.113482214152384]], "left adrenal gland": [[121.60075395406241, 4.266683492995461], [17.017417548383662, 18.48528509828753], [17.017417548383662, 18.48528509828753], [17.017417548383662, 18.48528509828753]], "adrenal gland": [[182.4265613513338, 7.813186080282246], [18.97442893128976, 20.599617257380345], [18.97442893128976, 20.599617257380345], [18.97442893128976, 20.599617257380345]], "right adrenal gland": [[158.21570288963346, 5.736947411814261], [17.17089273745977, 19.09450167978653], [17.17089273745977, 19.09450167978653], [17.17089273745977, 19.09450167978653]], "esophagus": [[253.86092392814248, 6.886078359154348], [13.252110919965341, 15.437200766467301], [13.252110919965341, 15.437200766467301], [13.252110919965341, 15.437200766467301]]}, "CT-Chest": {"nodule": [[115.14726334918862, 3.0043952160348844], [5.275338876748403, 7.899248653413393], [5.275338876748403, 7.899248653413393], [5.275338876748403, 7.899248653413393]], "COVID-19 infection": [[226.93782607812352, 10.662200522447263], [11.74323002038987, 23.773784082857407], [11.74323002038987, 23.773784082857407], [11.74323002038987, 23.773784082857407]], "tumor": [[81.39154648592063, 3.0363381821985254], [9.799683628807484, 19.248706134279548], [9.799683628807484, 19.248706134279548], [9.799683628807484, 19.248706134279548]]}, "MRI-Abdomen": {"aorta": [[840.9822169946456, 13.699556855062456], [2.9798604461548766, 1.19765659474954], [2.9798604461548766, 1.19765659474954], [2.9798604461548766, 1.19765659474954]], "postcava": [[151.3891903352374, 4.700455115571472], [3.065810750535689, 2.074722812609995], [3.065810750535689, 2.074722812609995], [3.065810750535689, 2.074722812609995]], "right kidney": [[613.4017011464975, 11.282616103318485], [4.63815461741129, 2.2967740371944867], [4.63815461741129, 2.2967740371944867], [4.63815461741129, 2.2967740371944867]], "duodenum": [[88.51851857758399, 5.251374959142798], [9.350910364523573, 8.85976960554745], [9.350910364523573, 8.85976960554745], [9.350910364523573, 8.85976960554745]], "kidney": [[831.5762248415444, 18.739059302777875], [5.715871882386201, 2.6205541393599527], [5.715871882386201, 2.6205541393599527], [5.715871882386201, 2.6205541393599527]], "left kidney": [[255.4744196400276, 5.573793361388763], [6.081920320421431, 2.930383603114708], [6.081920320421431, 2.930383603114708], [6.081920320421431, 2.930383603114708]], "liver": [[491.1931789168259, 9.294627086787225], [10.138029098677139, 6.28829088692463], [10.138029098677139, 6.28829088692463], [10.138029098677139, 6.28829088692463]], "pancreas": [[136.2304629992425, 5.676744286342953], [19.631392824605342, 11.528214201070567], [19.631392824605342, 11.528214201070567], [19.631392824605342, 11.528214201070567]], "gallbladder": [[75.18767252055355, 2.8711737605829892], [14.500831537679415, 20.696868858705496], [14.500831537679415, 20.696868858705496], [14.500831537679415, 20.696868858705496]], "stomach": [[89.16380420023327, 4.461224829090838], [10.266772743753412, 16.943404348738376], [10.266772743753412, 16.943404348738376], [10.266772743753412, 16.943404348738376]], "spleen": [[413.92566589639046, 7.99961594912814], [7.267087388529462, 5.149714876028216], [7.267087388529462, 5.149714876028216], [7.267087388529462, 5.149714876028216]], "left adrenal gland": [[86.44109991236728, 4.826813402237061], [17.153928230900817, 14.858036650050408], [17.153928230900817, 14.858036650050408], [17.153928230900817, 14.858036650050408]], "adrenal gland": [[303.9642820935704, 16.729857009916806], [19.500678047021523, 17.02588768312544], [19.500678047021523, 17.02588768312544], [19.500678047021523, 17.02588768312544]], "right adrenal gland": [[172.36803145644578, 8.050377438528958], [15.257519917725558, 13.431078702905772], [15.257519917725558, 13.431078702905772], [15.257519917725558, 13.431078702905772]], "esophagus": [[193.1348898340059, 7.6397334220243325], [12.240331385391299, 16.812971132953354], [12.240331385391299, 16.812971132953354], [12.240331385391299, 16.812971132953354]]}, "MRI-Cardiac": {"left heart ventricle": [[964.9072936969454, 17.21177762137991], [5.880290818671821, 4.100959742819713], [5.880290818671821, 4.100959742819713], [5.880290818671821, 4.100959742819713]], "myocardium": [[448.3393673888417, 17.591805257426998], [5.208511169313307, 15.910705163394415], [5.208511169313307, 15.910705163394415], [5.208511169313307, 15.910705163394415]], "right heart ventricle": [[359.88937669636215, 9.392153523781843], [5.924076424141962, 5.554667293878979], [5.924076424141962, 5.554667293878979], [5.924076424141962, 5.554667293878979]]}, "MRI-FLAIR-Brain": {"edema": [[69.4159007224176, 5.568921766085619], [13.400334168570177, 4.965265405638592], [13.400334168570177, 4.965265405638592], [13.400334168570177, 4.965265405638592]], "tumor core": [[154.26935124167449, 8.089254912853598], [14.908340542645478, 4.820086393609397], [14.908340542645478, 4.820086393609397], [14.908340542645478, 4.820086393609397]], "whole tumor": [[485.48717118600956, 16.01178236475156], [25.74323915508559, 8.636438181178145], [25.74323915508559, 8.636438181178145], [25.74323915508559, 8.636438181178145]]}, "MRI-T1-Gd-Brain": {"enhancing tumor": [[175.6437881777937, 7.539344668413025], [17.864705093992068, 5.36432831714689], [17.864705093992068, 5.36432831714689], [17.864705093992068, 5.36432831714689]], "non-enhancing tumor": [[37.6625733247702, 3.8454536110058246], [6.568014639412233, 8.446289690167484], [6.568014639412233, 8.446289690167484], [6.568014639412233, 8.446289690167484]], "tumor core": [[180.88223552813486, 6.610443841067055], [9.70294999498087, 5.30262880784197], [9.70294999498087, 5.30262880784197], [9.70294999498087, 5.30262880784197]]}, "Pathology": {"connective tissue cells": [[46.71165884847293, 4.997126203483956], [9.942495884846476, 15.700775443760845], [4.328453739888501, 18.42621798468577], [9.798096322131162, 11.920352021312304]], "inflammatory cells": [[39.600337990197595, 3.1848025413959706], [6.287418328538852, 20.538379638162322], [2.9521703595392146, 25.264465092284006], [6.559595490616054, 12.004686961917436]], "neoplastic cells": [[82.29374052289526, 8.22429924322936], [9.592296798563375, 14.818916788142138], [4.948629785308088, 19.78516221506478], [10.729094314024243, 12.934345198477494]], "epithelial cells": [[91.75183574899573, 9.577544361042948], [13.469843493323452, 27.305962287612964], [4.696928248406198, 25.254143364646463], [11.077634907582583, 13.487595094752443]]}, "X-Ray-Chest": {"left lung": [[529.1669758355144, 7.465035502868491], [8.220284641505614, 11.62958600654364], [8.220284641505614, 11.62958600654364], [8.220284641505614, 11.62958600654364]], "lung": [[465.7809501354513, 7.147122106450173], [8.781306299078446, 12.335455073688102], [8.781306299078446, 12.335455073688102], [8.781306299078446, 12.335455073688102]], "right lung": [[567.6127039725319, 7.532428563004494], [8.067311420424144, 11.229763331648746], [8.067311420424144, 11.229763331648746], [8.067311420424144, 11.229763331648746]]}, "Ultrasound-Cardiac": {"left heart atrium": [[1188.687550702627, 24.234766943758856], [5.18832820435626, 13.705576921752291], [5.18832820435626, 13.705576921752291], [5.18832820435626, 13.705576921752291]], "left heart ventricle": [[2787.334986695437, 58.297232816307506], [15.28158405889985, 56.95469460140377], [15.28158405889985, 56.95469460140377], [15.28158405889985, 56.95469460140377]]}, "Endoscopy": {"neoplastic polyp": [[392.89875472390315, 5.4678888279040745], [7.477729277754545, 1.6522601344780465], [7.2704247484339035, 6.347521355120636], [4.3902399436060335, 6.543658310376327]], "polyp": [[163.7838288028474, 3.4851615302599117], [7.03659746479883, 1.9088902542177986], [6.992807172875011, 6.756628353721484], [5.185761648208865, 8.977427344868255]], "non-neoplastic polyp": [[214.9199548332033, 4.360826895414348], [7.303363948417486, 1.9789835935004905], [10.54652900087687, 9.009706115553772], [6.917879576439251, 10.404634951284532]]}, "Fundus": {"optic cup": [[1482.9561484784422, 35.78105120937013], [52.1031548324398, 1.5080077510381715], [10.023538467761934, 3.1641925551155046], [3.394564722036805, 2.4391933423559626]], "optic disc": [[626.9141229495486, 20.95002931507066], [18.278454005466408, 1.8261365514325893], [16.42282430959315, 11.171338052048034], [4.8937792939550135, 6.987302868644637]]}, "Dermoscopy": {"lesion": [[134.43456931870887, 4.743684855379663], [5.18053578956456, 2.3527492367343634], [3.809383004477107, 6.368793378843402], [2.3888068456218847, 6.655396307215968]], "melanoma": [[454.17848530764076, 9.6466178116726], [4.022144360826467, 7.870140640677671], [4.87109613458874, 18.93721534855073], [3.107895746664011, 13.604075970992069]]}, "OCT": {"edema": [[260.11475018501574, 7.379315940573871], [4.162158474003, 17.437425953761988], [12.65808078622105, 81.37165793634547], [1.763378481483125, 4.427309203795247]]}} | ||
version https://git-lfs.github.com/spec/v1 | ||
oid sha256:384e5f8db866b757dc61e28d205c1e7223bf0b7ed416f91289ad0821a78e52db | ||
size 10812 |