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Issues: microbiomedata/nmdc_notebooks

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Issues list

Replace direct API calls in python with calls to the new nmdc_notebook_tools python package in NEON_soil_metadata notebook

#123 opened Feb 1, 2025 by simroux

Integration notebook: Wrapup housekeeping

#122 opened Jan 31, 2025 by bmeluch

5 tasks

Integration notebook: Refactor to run on multiple samples

#121 opened Jan 31, 2025 by bmeluch

Integration notebook: Investigate KEGG module and/or pathway coverage

#117 opened Jan 28, 2025 by bmeluch

2 of 4 tasks

Modularize Python API wrapper functions

#97 opened Nov 20, 2024 by bmeluch

3 tasks

Translate proteomic aggregation notebook into R

#96 opened Nov 20, 2024 by bmeluch

Create notebook that aggregates proteomic workflow outputs and visualizes the results

#95 opened Nov 20, 2024 by bmeluch

9 tasks done

Translate protein functional annotation notebook into R

#94 opened Nov 20, 2024 by bmeluch

Create a notebook exploring functional annotations in a single proteomics sample (Python)

#93 opened Nov 20, 2024 by bmeluch

Translate omics data integration notebook into Python

#92 opened Nov 20, 2024 by bmeluch

Create notebook integrating metag, metap, metab data (R)

#91 opened Nov 20, 2024 by bmeluch

4 of 7 tasks

Modularize R API wrapper functions

#90 opened Nov 13, 2024 by bmeluch

2 of 3 tasks

Add notebook using sparql-dataframe library in python

#31 opened Apr 17, 2024 by turbomam

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