feat: add .env for testing

microbiomedata · Nov 2, 2021 · f7d51e2 · f7d51e2
1 parent 7631d21
commit f7d51e2
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diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
@@ -30,6 +30,10 @@ jobs:
         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Make .env file
+      run: bash github_secrets_to_dotenv.sh "$secrets"
+      env:
+        secrets: ${{ toJson(secrets) }}
     - name: Test with pytest
       run: |
         pytest
diff --git a/github_secrets_to_dotenv.sh b/github_secrets_to_dotenv.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+# Create .env file from GitHub secrets
+
+json_secrets_str=$1
+env_filename=".env"
+
+jq -r 'to_entries|map("\(.key)=\(.value|tostring)")|.[]' <<< "$json_secrets_str" > "$env_filename"