feat: reboot terminusdb work

docker-compose.yml

@@ -91,7 +91,7 @@ services:
       MONGODB_REPLICA_SET_KEY: replicasetkey123
 
   terminus:
-    image: terminusdb/terminusdb-server:v10.0.24
+    image: terminusdb/terminusdb-server:v11.0.6
     container_name: terminus
     ports:
       - "6364:6363"

nmdc_runtime/api/db/terminus.py

@@ -1,11 +1,13 @@
 import os
+from functools import lru_cache
 
 from terminusdb_client import WOQLClient
 
 _state = {"client": None}
 
 
-async def get_terminus_db():
+@lru_cache
+def get_terminus_db():
     if _state["client"] is None:
         server_url = os.getenv("TERMINUS_SERVER_URL")
         key = os.getenv("TERMINUS_KEY")
@@ -14,10 +16,9 @@ async def get_terminus_db():
         dbid = os.getenv("TERMINUS_DBID")
         _client = WOQLClient(server_url=server_url)
         _client.connect(user=user, key=key, account=account)
-        db_info = _client.get_database(dbid=dbid, account=account)
+        db_info = _client.get_database(dbid=dbid)
         if db_info is None:
-            _client.create_database(dbid=dbid, accountid=account, label=dbid)
-            _client.create_graph(graph_type="inference", graph_id="main")
+            _client.create_database(dbid=dbid, label=dbid)
         _client.connect(user=user, key=key, account=account, db=dbid)
         _state["client"] = _client
     return _state["client"]

nmdc_runtime/site/terminusdb/generate.py

@@ -98,8 +98,8 @@ def visit_schema(self, inline: bool = False, **kwargs) -> None:
         self.graph.append(
             {
                 "@type": "@context",
-                "@base": "terminusdb:///data/",
-                "@schema": "terminusdb:///schema#",
+                "@base": "https://api.microbiomedata.org/nmdcschema/ids/",
+                "@schema": "https://w3id.org/nmdc/",
             }
         )