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addMDS and getMDS #689

Merged
merged 5 commits into from
Feb 11, 2025
Merged

addMDS and getMDS #689

merged 5 commits into from
Feb 11, 2025

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TuomasBorman
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This PR implements wrappers for runMDS and calculateMDS.

  1. User do not need to specify FUN = getDissimilarity and tree = rowTree(x), node.label = rowLinks(x)[[1]] as they are now default values.
  2. If rarefaction drops off some samples due to insufficient sampling depth, this is handled in addMDS.

@TuomasBorman TuomasBorman merged commit a2b426a into devel Feb 11, 2025
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@TuomasBorman TuomasBorman deleted the runMDS branch February 11, 2025 07:59
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@TuomasBorman