A runner for the MNE BIDS Pipeline

Features

• Download the latest MNE BIDS Pipeline
• Update your local copy of the MNE BIDS Pipeline
• Run the MNE BIDS Pipeline
• Use separate versions of the MNE BIDS Pipeline for each of your projects

Installation

pip install -e .

Usage

The easiest way to get started is by simply running

mne-bids-pipeline

from your project directory (i.e. the one that contains e.g. your analysis code and / or data) in the terminal. An interactive menu will appear, allowing you to access all functionality.

You may also skip some of the menu selection process by passing certain command line arguments, as demonstrated below.

Install the MNE BIDS Pipeline

mne-bids-pipeline install

This downloads the latest version of the pipeline.

Update the MNE BIDS Pipeline

mne-bids-pipeline update

This updates your MNE BIDS Pipeline to the latest version.

Run the MNE BIDS Pipeline

mne-bids-pipeline run

This runs the MNE BIDS Pipeline. Please note that additional command line arguments need to be passed, otherwise you will only get usage instructions.

Working example:

mne-bids-pipeline run --config=./my_custom_config.py