snakePipes 2.7.2

snakePipes 2.7.2

• STAR version has been updated to 2.7.10b. 2.7.10a was returning segmentation fault on MAC.

• STAR command has been updated. Now, STAR itself offers a command line option for processing input files.

• Put a cap on python version for the deeptools env. The current version of deeptools is not supporting the newer python versions and some tools fail.

• Update default condaDir.

• The filter_gtf function has become a bit more versatile. GTF files that include delimiters (';') in e.g. a description field are now allowed. Gene names are also allowed to have symbols now. Lastly, GTF files that have xRNA instead of transcript as a feature in column 3 can also be parsed.

What's Changed

• capped snakemake version by @katsikora in #864
• bumped minor version by @katsikora in #865
• Develop by @katsikora in #866
• Release 2.7.1 by @katsikora in #868
• mm10 organism yaml blacklist by @katsikora in #867
• changes in STAR command and version by @LeilyR in #873
• updated the news.rst file by @LeilyR in #875
• Config ks by @katsikora in #876
• Filtergtf by @WardDeb in #869
• Develop by @katsikora in #879
• bumped bugfix version by @katsikora in #882

Full Changelog: 2.7.0...2.7.2