GitHub - mariabernard/galaxy: Data intensive science for everyone.

The latest information about Galaxy is available via https://galaxyproject.org/

Galaxy Quickstart

Galaxy requires Python 2.7 To check your python version, run:

$ python -V
Python 2.7.3

Start Galaxy:

$ sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your browser at:

http://localhost:8080

You may wish to make changes from the default configuration. This can be done in the config/galaxy.ini file. Tools can be either installed from the Tool Shed or added manually. For details please see the Galaxy wiki:

https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial

Not all dependencies are included for the tools provided in the sample tool_conf.xml. A full list of external dependencies is available at:

https://wiki.galaxyproject.org/Admin/Tools/ToolDependencies

Issues and Galaxy Development

Please see CONTRIBUTING.md .

Roadmap

Interested in the next steps for Galaxy? Take a look here: galaxyproject#1928

Name	Name	Last commit message	Last commit date
Latest commit dannon Merge branch 'release_16.04' into dev Jul 19, 2016 f36095a · Jul 19, 2016 History 23,490 Commits
.ci	.ci	Python3: test/unit/	Jun 29, 2016
client	client	Rename 'internal_api' endpoint to 'api_internal' so that the base web…	Jul 18, 2016
config	config	Graph visualization: add parsers, change datatypes	Jul 15, 2016
contrib	contrib	Make some files compatible with Python3	Jun 3, 2016
cron	cron	Make some files compatible with Python3	Jun 3, 2016
database	database	Add tool search to workflow editor. Also standardize tool panel struc…	Sep 20, 2010
display_applications	display_applications	Add the missing bigwig xml file for the IGV display application	Jun 26, 2016
doc	doc	minor docs touch	May 27, 2016
external_service_types	external_service_types	Fixes for transferring files from external services using the http pr…	Apr 14, 2011
lib	lib	Merge branch 'release_16.04' into dev	Jul 19, 2016
locale	locale	Modify some string in Mako templetes for complete i18n support.	Nov 24, 2011
openid	openid	Abstract OpenID providers to be defined outside of the Python code an…	Mar 23, 2012
scripts	scripts	When CONDA_ALREADY_INSTALLED is undefined there's an error due to the…	Jul 8, 2016
static	static	Rename 'internal_api' endpoint to 'api_internal' so that the base web…	Jul 18, 2016
templates	templates	Merge branch 'release_16.04' into dev	Jul 19, 2016
test-data	test-data	Merge branch 'release_16.04' into dev	Jun 8, 2016
test	test	Merge branch 'release_16.04' into dev	Jul 19, 2016
tool-data	tool-data	Add Phinch as an external display application. Currently linking to a…	Apr 1, 2016
tools	tools	Update gsummary.xml	Jul 12, 2016
.coveragerc	.coveragerc	Create unit test directory with example test. Enable coverage report …	Jun 24, 2013
.gitignore	.gitignore	Merge remote-tracking branch 'galaxyproject/dev' into gie-generic	Apr 4, 2016
.travis.yml	.travis.yml	Drop python2.6 (deprecated, will not be supported in 16.04) from test…	Feb 23, 2016
CITATION	CITATION	Adding a CITATION file, http://software-carpentry.org/blog/2013/09/in…	Sep 2, 2013
CODE_OF_CONDUCT.md	CODE_OF_CONDUCT.md	Fix typo found by @nsoranzo .	Aug 25, 2015
CONTRIBUTING.md	CONTRIBUTING.md	doc tox	Oct 15, 2015
CONTRIBUTORS.md	CONTRIBUTORS.md	Update spelling.	May 4, 2016
LICENSE.txt	LICENSE.txt	Add list of contributors	Jun 15, 2015
Makefile	Makefile	Add Makefile target for fetching updated bower dependencies.	Jun 24, 2016
README.rst	README.rst	Update README to remove 2.6	May 17, 2016
create_db.sh	create_db.sh	Fix create/manage db scripts to respect GALAXY_VIRTUAL_ENV.	Feb 29, 2016
extract_dataset_parts.sh	extract_dataset_parts.sh	Fix for splitting with outputs_to_working_directory = True, also rena…	Nov 3, 2011
manage_db.sh	manage_db.sh	Fix create/manage db scripts to respect GALAXY_VIRTUAL_ENV.	Feb 29, 2016
manage_tools.sh	manage_tools.sh	Update more scripts to respect GALAXY_VIRTUAL_ENV.	Mar 3, 2016
requirements.txt	requirements.txt	Pin release wheel verisons. pinned-requirements.txt renamed to	Jan 13, 2016
rolling_restart.sh	rolling_restart.sh	Restore a line deleted by mistake. Thanks John.	Feb 2, 2015
run.sh	run.sh	Fixing error in run.sh script	Mar 21, 2016
run_reports.sh	run_reports.sh	Another fix for virtualenv fixes.	Mar 10, 2016
run_tests.sh	run_tests.sh	Small run_tests.sh documentation updates.	Jun 26, 2016
run_tool_shed.sh	run_tool_shed.sh	change run_tool_shed.py to see the file in the correct lcoation	Apr 8, 2016
setup.cfg	setup.cfg	Ignore W503 as PEP 8 has reversed its position on this.	Jul 7, 2016
tool_list.py	tool_list.py	Make some files compatible with Python3	Jun 3, 2016
tox.ini	tox.ini	flake8 2.6.2 released	Jun 26, 2016

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Repository files navigation

Galaxy Quickstart

Issues and Galaxy Development

Roadmap

About

Releases

Packages

Languages

License

mariabernard/galaxy

Folders and files

Latest commit

History

Repository files navigation

Galaxy Quickstart

Issues and Galaxy Development

Roadmap

About

Resources

License

Code of conduct

Citation

Stars

Watchers

Forks

Releases

Packages 0

Languages

Packages