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/codeScripts with prefixes (e.g.,01_import-data.py,02_clean-data.py) and functions in/code/src./dataSimulated and real data, the latter not pushed./figuresPNG images and plots./outputOutput from model runs, not pushed./presentationsPresentation slides./privateA catch-all folder for miscellaneous files, not pushed./renvProject library, once initialized (see below)./writingCase studies and the paper./.venvHidden project library, not pushed..gitignoreHidden Git instructions file..python-versionHidden Python version for the reproducible environment.renv.lockInformation on the reproducible environment.requirements.txtInformation on the reproducible environment.
After cloning this repository, go to the project’s terminal in Positron
and run python -m venv .venv to create the /.venv project library,
followed by pip install -r requirements.txt to install the specified
library versions.
Whenever you install new libraries or decide to update the versions of
libraries you use, run pip freeze > requirements.txt to update
requirements.txt.
Add a reproducible environment by creating a project library using the
{renv} package.
- Initialize the project library once using
renv::init(). - Once you’ve installed packages, add them to the project library using
renv::snapshot(). - If a project library already exists, install the associated packages
with
renv::restore().
For more details on using GitHub, Quarto, etc. see ASC Training.