Merge pull request #167 from malariagen/GH166_use_Miniforge

Replace Miniconda with Miniforge. Pin MySQL.
malariagen · Jan 17, 2025 · e09b264 · e09b264
2 parents c9039aa + 5cb330e
commit e09b264
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diff --git a/env.sh b/env.sh
@@ -4,7 +4,14 @@
 MGENVDIR=$(dirname "${BASH_SOURCE[0]}")
 
 # setup environment variables
+# Note: this also adds "$INSTALLDIR/conda/bin" to $PATH
+echo "[mgenv] setting environmental variables"
 source ${MGENVDIR}/variables.sh
 
+# activate conda
+echo "[mgenv] activating conda"
+source "$INSTALLDIR/conda/etc/profile.d/conda.sh"
+
 # activate conda environment
-command -v conda > /dev/null && source activate $CONDANAME || echo "conda not installed"
+echo "[mgenv] activating environment $CONDANAME"
+command -v conda > /dev/null && conda activate $CONDANAME || echo "conda not installed"