deploy: 537fb71

mackelab · Feb 4, 2024 · 48a8cdc · 48a8cdc
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diff --git a/404.html b/404.html
diff --git a/api/index.html b/api/index.html
@@ -2123,9 +2123,7 @@ <h2 id="labproject.utils.get_cfg" class="doc doc-heading">
 
           <details class="quote">
             <summary>Source code in <code>labproject/utils.py</code></summary>
-            <div class="highlight"><table class="highlighttable"><tr><td class="linenos"><div class="linenodiv"><pre><span></span><span class="normal">22</span>
-<span class="normal">23</span>
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+            <div class="highlight"><table class="highlighttable"><tr><td class="linenos"><div class="linenodiv"><pre><span></span><span class="normal">24</span>
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@@ -2142,7 +2140,9 @@ <h2 id="labproject.utils.get_cfg" class="doc doc-heading">
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-<span class="normal">41</span></pre></div></td><td class="code"><div><pre><span></span><code><span class="k">def</span> <span class="nf">get_cfg</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">OmegaConf</span><span class="p">:</span>
+<span class="normal">41</span>
+<span class="normal">42</span>
+<span class="normal">43</span></pre></div></td><td class="code"><div><pre><span></span><code><span class="k">def</span> <span class="nf">get_cfg</span><span class="p">()</span> <span class="o">-&gt;</span> <span class="n">OmegaConf</span><span class="p">:</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;This function returns the configuration file for the current experiment run.</span>
 
 <span class="sd">    The configuration file is expected to be located at ../configs/conf_{name}.yaml, where name will match the name of the run_{name}.py file.</span>
@@ -2157,7 +2157,7 @@ <h2 id="labproject.utils.get_cfg" class="doc doc-heading">
     <span class="n">filename</span> <span class="o">=</span> <span class="n">caller_frame</span><span class="o">.</span><span class="n">f_code</span><span class="o">.</span><span class="n">co_filename</span>
     <span class="n">name</span> <span class="o">=</span> <span class="n">filename</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;/&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;_&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
     <span class="k">try</span><span class="p">:</span>
-        <span class="n">config</span> <span class="o">=</span> <span class="n">OmegaConf</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;../configs/conf_</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">.yaml&quot;</span><span class="p">)</span>
+        <span class="n">config</span> <span class="o">=</span> <span class="n">OmegaConf</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">CONF_PATH</span> <span class="o">+</span> <span class="sa">f</span><span class="s2">&quot;/conf_</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">.yaml&quot;</span><span class="p">)</span>
     <span class="k">except</span> <span class="ne">FileNotFoundError</span><span class="p">:</span>
         <span class="n">msg</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;Config file not found for </span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">. Please create a config file at ../configs/conf_</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">.yaml&quot;</span>
         <span class="k">raise</span> <span class="ne">FileNotFoundError</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span>
@@ -2215,9 +2215,7 @@ <h2 id="labproject.utils.set_seed" class="doc doc-heading">
 
           <details class="quote">
             <summary>Source code in <code>labproject/utils.py</code></summary>
-            <div class="highlight"><table class="highlighttable"><tr><td class="linenos"><div class="linenodiv"><pre><span></span><span class="normal"> 9</span>
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@@ -2226,7 +2224,9 @@ <h2 id="labproject.utils.set_seed" class="doc doc-heading">
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-<span class="normal">20</span></pre></div></td><td class="code"><div><pre><span></span><code><span class="k">def</span> <span class="nf">set_seed</span><span class="p">(</span><span class="n">seed</span><span class="p">:</span> <span class="nb">int</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="normal">20</span>
+<span class="normal">21</span>
+<span class="normal">22</span></pre></div></td><td class="code"><div><pre><span></span><code><span class="k">def</span> <span class="nf">set_seed</span><span class="p">(</span><span class="n">seed</span><span class="p">:</span> <span class="nb">int</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;Set seed for reproducibility</span>
 
 <span class="sd">    Args:</span>

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diff --git a/index.html b/index.html
@@ -504,7 +504,7 @@ <h2 id="installation">Installation</h2>
 <h2 id="development">Development</h2>
 <p>Develop code in your desired way, e.g. in local notebooks (you don't commit, the public notebooks for the website can be found in <code>docs/notebooks/</code>). </p>
 <p>Once you want other people to see your figure/experiment, add them to <code>plotting.py</code> and <code>experiments.py</code> and call the corresponding functions in <code>run.py</code>. </p>
-<p>After committing and pushing your changes, GitHub will execute <code>run.py</code> and update the figures in Overleaf. </p>
+<p>After committing and pushing your changes, GitHub will execute every <code>run_*.py</code> and update the figures in Overleaf. </p>
 <p>You can obviously also run it yourself with <code>python labproject/run.py</code>.</p>
 <h2 id="documentation">Documentation</h2>
 <p>We use mkdocs to create the public version of our tutorials (notebooks) and the API documentation. mkdocs are written in Markdown and are found in <code>docs/</code>.</p>

diff --git a/notebooks/example/index.html b/notebooks/example/index.html
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