Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Jun 22, 2015

• Merge pull request macs3-project#83 from bgruening/patch-1

  Show description for f4140f4
  taoliu

  committed
  f4140f4

  Copy full SHA for f4140f4

Commits on Jun 19, 2015

• Make the readme more readable

  bgruening

  committed
  819df54

  Copy full SHA for 819df54

Commits on Jun 3, 2015

• Fixed the issue with multiple input files. Now, call fwtrack.finalize

  Show description for b330726
  taoliu

  committed
  b330726

  Copy full SHA for b330726

Commits on May 28, 2015

• fixed bdgopt bugs, related to issue macs3-project#79

  taoliu

  committed
  b459cdb

  Copy full SHA for b459cdb

Commits on Apr 24, 2015

• 1) Fixed issue macs3-project#76: information about broad cutoff and narrow cutoff will

  Show description for 49aa2b7
  taoliu

  committed
  49aa2b7

  Copy full SHA for 49aa2b7

Commits on Apr 20, 2015

• Remove words about diffpeak entirely...

  taoliu

  committed
  8d266b2

  Copy full SHA for 8d266b2

• 2015.4.20 release

  taoliu

  committed
  7f46b06

  Copy full SHA for 7f46b06

• Merge branch 'master' of https://github.com/taoliu/MACS

  taoliu

  committed
  822c407

  Copy full SHA for 822c407

• Fix bug in pileup_a_chromosome function of PairedEndTrack. Shouldn't

  Show description for d90cd46
  taoliu

  committed
  d90cd46

  Copy full SHA for d90cd46

Commits on Apr 6, 2015

• Update README.rst

  taoliu

  committed
  eaa598c

  Copy full SHA for eaa598c

Commits on Mar 17, 2015

• Fix description of callpeak on replicates. '-t' and '-c'.

  taoliu

  committed
  f614caf

  Copy full SHA for f614caf

• Merge branch 'master' of https://github.com/taoliu/MACS

  Show description for c1b1988
  taoliu

  committed
  c1b1988

  Copy full SHA for c1b1988

Commits on Mar 13, 2015

• Update ChangeLog

  Show description for 7f81867
  taoliu

  committed
  7f81867

  Copy full SHA for 7f81867

• Update ChangeLog (not finished)

  taoliu

  committed
  2c59172

  Copy full SHA for 2c59172

• Merge pull request macs3-project#71 from aertslab/fix_file_descriptor_leak

  Show description for 3508d31
  taoliu

  committed
  3508d31

  Copy full SHA for 3508d31

Commits on Mar 12, 2015

• Close file descriptors for temporary files after creating them with mkstemp().

  Show description for 1e0722e
  ghuls

  committed
  1e0722e

  Copy full SHA for 1e0722e

• O3 -> Ofast

  taoliu

  committed
  ee79249

  Copy full SHA for ee79249

• Speed up bedGraph file writing by using C functions.

  taoliu

  committed
  f860986

  Copy full SHA for f860986

Commits on Mar 10, 2015

• Fix setup script. Put back -Ofast...

  taoliu

  committed
  782bf5c

  Copy full SHA for 782bf5c

• Optimize model building step. Change compilation option from -Ofast to

  Show description for a7a4419
  taoliu

  committed
  a7a4419

  Copy full SHA for a7a4419

• Rename source files: 1) cXXX.pyx files have been renamed as XXX.pyx;

  Show description for aba0cfb
  taoliu

  committed
  aba0cfb

  Copy full SHA for aba0cfb

Commits on Jan 21, 2015

• Change version number.

  taoliu

  committed
  87fca3e

  Copy full SHA for 87fca3e

• Merge branch 'master' of https://github.com/taoliu/MACS

  Show description for 87e287d
  taoliu

  committed
  87e287d

  Copy full SHA for 87e287d

• Hide diffpeak module; While reading BAM/SAM file, filter those lines

  Show description for 7170b41
  taoliu

  committed
  7170b41

  Copy full SHA for 7170b41

Commits on Dec 18, 2014

• Merge pull request macs3-project#62 from jayhesselberth/master

  Show description for 22d47e5
  taoliu

  committed
  22d47e5

  Copy full SHA for 22d47e5

Commits on Dec 1, 2014

• fix extsize opt validation

  jayhesselberth

  committed
  b9c703a

  Copy full SHA for b9c703a

Commits on Nov 2, 2014

• A bug is fixed. 'quick_pileup' needs both ends sorted, so I have to

  Show description for fb73eb8
  taoliu

  committed
  fb73eb8

  Copy full SHA for fb73eb8

Commits on Oct 29, 2014

• Fixed bugs related to BAMPE.

  taoliu

  committed
  b380898

  Copy full SHA for b380898

• Change subversion tag 20141030.

  taoliu

  committed
  1a2ce10

  Copy full SHA for 1a2ce10

• Code cleanup. But maybe slower speed for reading BAM? Haven't tested

  Show description for 86a4814
  taoliu

  committed
  86a4814

  Copy full SHA for 86a4814

• Fixed issue macs3-project#53: Use SAM/BAM CIGAR to find the 5' end of read mapped

  Show description for 7eef501
  taoliu

  committed
  7eef501

  Copy full SHA for 7eef501

Commits on Oct 28, 2014

• Fixed issue macs3-project#56: An incorrect sorting method had been used for PE

  Show description for dd13599
  taoliu

  committed
  dd13599

  Copy full SHA for dd13599

Commits on Oct 23, 2014

• Related to issue macs3-project#33. Explain that MACS2 will discard those SAM/BAM

  Show description for 4336fcb
  taoliu

  committed
  4336fcb

  Copy full SHA for 4336fcb

• Fixed issue macs3-project#51. Set GCC flags to suppress all warning and set

  Show description for 8b2ad81
  taoliu

  committed
  8b2ad81

  Copy full SHA for 8b2ad81

• Fixed issue macs3-project#49: switch to setuptools.

  taoliu

  committed
  07d09ad

  Copy full SHA for 07d09ad

Pagination

Previous

Next