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Merge branch 'master' of https://github.com/taoliu/MACS
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taoliu committed Apr 20, 2015
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Expand Up @@ -33,7 +33,7 @@ Usage of MACS2

:Example for regular peak calling: ``macs2 callpeak -t ChIP.bam -c Control.bam -f BAM -g hs -n test -B -q 0.01``

:Example for broad peak calling: ``macs2 -t ChIP.bam -c Control.bam --broad -g hs``
:Example for broad peak calling: ``macs2 callpeak -t ChIP.bam -c Control.bam --broad -g hs --broad-cutoff 0.1``

There are seven major functions available in MACS serving as sub-commands.

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