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Commits on Sep 20, 2016

• Merge pull request macs3-project#149 from shengqh/master

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Commits on Sep 12, 2016

• fix righ_pos to right_pos

  shengqh

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Commits on May 19, 2016

• Related to issue macs3-project#122. Check ndarray size, then resize it to half size

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Commits on May 16, 2016

• Merge pull request macs3-project#129 from mr-c/spelling2

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Commits on May 13, 2016

• more spelling tweaks :-)

  mr-c

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Commits on Mar 9, 2016

• Merge branch 'master' of https://github.com/taoliu/MACS

  taoliu

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• Merge branch 'master' of https://github.com/taoliu/MACS

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  taoliu

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• Remove filtering criteria of bwflag&2048 so PCR/Optical duplicate will

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Commits on Mar 5, 2016

• Merge pull request macs3-project#120 from mr-c/spelling-fixes

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  taoliu

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• Fix spelling

  mr-c

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Commits on Feb 26, 2016

• Release 2.1.1.

  taoliu

  committed
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• Fix the issue: macs3-project#108 when no peaks in a chromosome, PeakIO

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Commits on Feb 15, 2016

• Fixed a bug so that in PE mode after filtering duplicates, the first read

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  taoliu

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• A more flexible format, BEDPE, is supported. Related to issue

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Commits on Feb 12, 2016

• Enable 'max' and 'min' functions for bdgopt; enable 'max' function for bdgcmp.

  taoliu

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Commits on Jan 30, 2016

• Merge branch 'master' of https://github.com/taoliu/MACS

  taoliu

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• Replace C FLAG '-Ofast' with more compatible '-O3 -ffast-math' in

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Commits on Dec 23, 2015

• Merge pull request macs3-project#97 from daler/master

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Commits on Dec 22, 2015

• One more line in ChangeLog.

  taoliu

  committed
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• Fix a bug related to the broad peak calling function in previous

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  taoliu

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Commits on Oct 9, 2015

• Update FixWidthTrack.pyx

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  taoliu

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• Update PairedEndTrack.pyx

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Commits on Sep 16, 2015

• add option to specify tempdir from commandline

  daler

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Commits on Jul 31, 2015

• Correct time-stamp for 20150731 release.

  taoliu

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• Update version tag.

  taoliu

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• Update ChangeLog

  taoliu

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Commits on Jul 30, 2015

• Fixed bug macs3-project#86. A wrong usage of 'ndarray' caused 'callpeak --nolambda'

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  taoliu

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Commits on Jul 28, 2015

• Update README.rst

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• ChangeLog updated

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Commits on Jul 27, 2015

• Fixed cProb reference in filterdup_cmd.py --> Prob.

  taoliu

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• Removed a debug line.

  taoliu

  committed
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• Fixed issues related to issue macs3-project#88. Also, explicitly sort PE read pairs

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  taoliu

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• Merge branch 'master' of https://github.com/taoliu/MACS

  taoliu

  committed
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• Fixed issue macs3-project#88. The 'finalize' function should be called on PETrack object.

  taoliu

  committed
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Commits on Jun 26, 2015

• Update README.rst

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