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check uwot version #24

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merged 1 commit into from
Dec 13, 2023
Merged

check uwot version #24

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4 changes: 3 additions & 1 deletion Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,9 @@ RUN unset ALI_TOKEN

# Install dependencies
RUN R -e "devtools::install_github(c('evocellnet/ksea', 'omarwagih/rmotifx', 'ecnuzdd/PhosMap'))"
RUN R -e "devtools::install_version('Matrix', version='1.5-3')"
RUN R -e "remove.packages('uwot')"
RUN R -e "remove.packages('Matrix')"
RUN R -e "devtools::install_version('uwot', version='0.1.14')"
RUN sudo apt-get install -y libgtk-3-dev cmake build-essential libcurl4-gnutls-dev libxml2 libxml2-dev libodbc1 libssl-dev libv8-dev libsodium-dev&& apt-get clean
RUN Rscript /srv/shiny-server/r_packages_install.R

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5 changes: 4 additions & 1 deletion README.md
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Expand Up @@ -104,9 +104,12 @@ This tool is developed with R, so if you want to run it locally, you may do some
install.packages('devtools')
require(devtools)

install_version('Matrix', version = '1.5-3')
install_github('evocellnet/ksea')
install_github('ecnuzdd/PhosMap')

remove.packages('uwot')
remove.packages('Matrix')
devtools::install_version('uwot', version='0.1.14')
```
- [6] **click "Run App".** View the file ui.R, then just click button "Run App", Phosmap will start.

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