Fix an issueing of generating AIRR file for the smartseq wrapper

liulab-dfci · Apr 7, 2024 · 73d5062 · 73d5062
1 parent d19bb3a
commit 73d5062
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/run-trust4 b/run-trust4
@@ -7,7 +7,7 @@ use Cwd qw(cwd abs_path) ;
 use File::Basename ;
 use File::Path qw(make_path) ;
 
-die "TRUST4 v1.1.0-r498 usage: ./run-trust4 [OPTIONS]:\n".
+die "TRUST4 v1.1.0-r499 usage: ./run-trust4 [OPTIONS]:\n".
     "Required:\n".
     #"\t[Input]:\n".
     "\t-b STRING: path to bam file\n".

diff --git a/trust-smartseq.pl b/trust-smartseq.pl
@@ -251,7 +251,7 @@ sub GetPairChainType
 		my $contigId = (split /_/, $cols[0])[0] ;
 		next if (!defined $selectedContigs{$contigId}) ;
 		my @matchedCols = @{$representativeCols[ $selectedContigs{$contigId} ]} ;
-		if ($matchedCols[2] eq $cols[12])
+		if ($matchedCols[2] eq $cols[13])
 		{
 			$cols[0] = ${cellPrefix}."_".$cols[0] ;
 			print FPfinalairr join("\t", @cols), "\n" ;