Code

Private ips setup#2

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cgpu wants to merge 37 commits intostage-cloud-storage-fileslifebit-ai/spammer-nf:stage-cloud-storage-filesfrom private-ips-setuplifebit-ai/spammer-nf:private-ips-setupCopy head branch name to clipboard

+98-11

Commits

Commits on Mar 10, 2021

• Update nextflow.config

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• Rename s3Location to be cloud agnostic

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Commits on Mar 11, 2021

• Adds google.config

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• Update nextflow.config

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• Adds gls info in main.nf

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• Update google.config

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• Inits processAMachineType to false

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• Removes machineType

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• Adds google.lifeSciences.usePrivateAddress

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• Replaces s3Location with cloudStorageLocation

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• Update nextflow.config

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• Update nextflow.config

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Commits on Mar 12, 2021

• Updates publishDir; Updates s3 -> agnostic

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• Updates branch

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Commits on Mar 14, 2021

• Adds option to gls_sshDaemon

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Commits on Apr 12, 2021

• Absorbs latest changes from stage-cloud-storage-files

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• Adds private ip params in log.info

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• Adds empty line

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Commits on Apr 23, 2021

• Removes defaultBranch

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Commits on May 12, 2021

• Removes log.info "defaultBranch"

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• Sets default gls copyImage to gcr.io

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• Adds sshImage and copyImage as params

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Commits on May 14, 2021

• Updates container for google cloud config

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Commits on May 20, 2021

• Adds awsbatch.config

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• Parameterises batch options

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• Adds aws batch params in log.info header

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• Fix param name typo

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Commits on May 21, 2021

• Fix params name

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Commits on Jul 1, 2021

• Update google.config

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Commits on Aug 18, 2021

• Adds aws_ignite.config in conf/

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• Experimentally add execution vars in print header

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• Adds defaults for ignite on AWS

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• Adds defaults for ignite on AWS

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Commits on Aug 24, 2021

• Adds command-logs folder in results (.command*)

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Commits on Sep 28, 2021

• Adds qa.config

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• Update qa.config

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Commits on Oct 6, 2021

• Updates regex * -> ** [traverse nested folders]

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