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  • leomrtns.github.io Public

    github homepage

    HTML GNU Lesser General Public License v3.0 Updated Feb 14, 2025

  • leomrtns Public

    github profile readme

    Updated Jan 14, 2025

  • phylobarcode Public

    <pilot> in-silico amplicons optimised for phylogenetic signal

    Python GNU General Public License v3.0 Updated Oct 18, 2024

  • uvaia Public

    Reference-based alignment and sequence database search of SARS-CoV-2 genomes.

    C GNU General Public License v3.0 Updated Sep 2, 2024

  • peroba Public

    Phylogenetic Epidemiology with ROBust Assignment

    Python GNU General Public License v3.0 Updated Aug 19, 2024

  • biomcmc-lib Public

    C library with low-level functions used by other software

    C GNU General Public License v3.0 Updated Aug 19, 2024

  • tatajuba Public

    Identification and classification of homopolymeric tracts from reads

    C GNU General Public License v3.0 Updated Aug 19, 2024

  • amburana Public

    Alignment-free sequence clustering

    C GNU General Public License v3.0 Updated Aug 19, 2024

  • notebooks Public

    jupyter notebooks rendered into html pages

    Jupyter Notebook GNU General Public License v3.0 Updated Oct 3, 2023

  • minimal-pathogen-agnostic-contextual-data-specification Public

    Forked from pha4ge/minimal-pathogen-agnostic-contextual-data-specification

    An international minimal metadata standard for public health and One Health genomic surveillance.

    MIT License Updated May 3, 2023

  • curupixa Public

    Low-level C library for phylogenetics. Currently under development

    c genomics phylogenetics
    C 2 GNU General Public License v3.0 Updated Sep 1, 2022

  • cumaru Public

    Multiple sequence alignment using code from kalign3 (https://github.com/TimoLassmann/kalign) from TimoLassmann

    C GNU General Public License v3.0 Updated Aug 28, 2022

  • jupyterblog Public

    fastpages blog

    Jupyter Notebook Apache License 2.0 Updated Aug 16, 2022

  • WFA Public

    Forked from smarco/WFA-paper

    Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

    C Other Updated Jul 1, 2022

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated May 6, 2022

  • bwa Public

    Forked from lh3/bwa

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

    C GNU General Public License v3.0 Updated Oct 28, 2021

  • recomb-biomc2 Public

    Hiearchical Bayesian Model for Viral Phylogenetic Recombination

    Roff 1 GNU General Public License v2.0 Updated Oct 22, 2020

  • tauari Public

    Python bindings to biomc2

    Python GNU General Public License v3.0 Updated Sep 14, 2020

  • genefam-dist Public

    C library for distance calculation between gene families and species trees, with a python module for creating a "signature" of a gene family tree.

    C 4 GNU General Public License v3.0 Updated Jan 13, 2020

  • super_distance Public

    Forked from quadram-institute-bioscience/super_distance

    Supertree estimation from gene trees to species trees, using matrix representation with distances.

    Shell GNU General Public License v3.0 Updated Dec 2, 2019

  • specimage Public

    Python module to work with hyperspectral imaging data

    Jupyter Notebook 2 GNU Lesser General Public License v3.0 Updated Nov 23, 2016