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Change SRA fastq directory #418

Merged
merged 3 commits into from
Dec 14, 2024
Merged

Change SRA fastq directory #418

merged 3 commits into from
Dec 14, 2024

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b-full
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@b-full b-full commented Oct 25, 2024

Change the directory where SRA fastq files are downloaded and add the 'orig_filename' column to the config object for each sample so that the rest of the workflow works correctly

Change the directory where SRA fastq files are downloaded and add the
'orig_filename' column to the config object for each sample so that the rest of the workflow works correctly
Change a nested for-loop implementation in patters_targets.py to a more elegant one-line solution and clean up some code in Snakefile
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b-full commented Nov 21, 2024

Addresses #408

add check when combining by `zip` to ensure values are all same length

add more doctests
@daler daler merged commit aeca4c2 into v1.12rc Dec 14, 2024
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@daler daler deleted the fix_issue_408 branch December 14, 2024 03:05
@daler daler mentioned this pull request Jan 2, 2025
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2 participants