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V2.0#38

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along4 wants to merge 147 commits intomainlanl/PLEIADES:mainfrom v2.0lanl/PLEIADES:v2.0Copy head branch name to clipboard

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Commits

Commits on Dec 3, 2024

• migrating to new repo structure

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• new static data manager

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Commits on Dec 4, 2024

• add unit test and update pytest settings

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• add github action for unit test

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Commits on Dec 17, 2024

• add skeleton for the sammy backend support

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Commits on Dec 20, 2024

• add configuration management for SAMMY execution backends

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• add directory preparation and execution logic for LocalSammyRunner

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• refactor main execution logic in LocalSammyRunner for improved readability

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• refactor Docker configuration validation and output collection logic in SAMMY backend

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Commits on Dec 23, 2024

• add NOVA backend implementation for SAMMY execution with configuration and execution logic

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• add testing input data

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• add pyyaml dependency and configuration for SAMMY runner

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• add back images

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• refactor SAMMY backend: update output collection logic and remove async methods in SammyRunner; add pytest fixtures for testing

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• update poetry lock file

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• fix issues on runner

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• add unit test for interface

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Commits on Dec 26, 2024

• add unit tests for LocalSammyRunner and update coverage configuration

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• fix errors introduced by pre-commit

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• fix issues related to mocked sammy binary

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• add unit test for docker runner

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• add unit test for nova runner

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Commits on Dec 27, 2024

• add unit test for factory

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• fix missing mocks for sammy binary

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Commits on Dec 30, 2024

• add physical constants and validation tests

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• add core physical quantity models with validation

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• update deps lock

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Commits on Dec 31, 2024

• add models unit test

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• add neutron transmission calculations with error handling and logging

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• migrate sammy par file handler

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Commits on Jan 1, 2025

• switch back to original parFile parser

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• add legacy folder for og implementation

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Commits on Jan 7, 2025

• add resonance card

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• fix import error that leads to incorrect cov report

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Commits on Jan 9, 2025

• add extern R card parser

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Commits on Jan 10, 2025

• add document to docs for original design

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Commits on Jan 14, 2025

• fix name typo

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• add refactor design document

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Commits on Jan 16, 2025

• switch to pep621 format

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• add boardening card parser

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Commits on Jan 17, 2025

• add boradening paramter card

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• add unused card

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• add normalization card

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Commits on Jan 22, 2025

• add radius parser

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• add unit test for radii

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• finished up development for radii card

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• Merge pull request #23 from lanl/refactor_2nd_attempt

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Commits on Jan 23, 2025

• add parser for data reduction

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• add unit test for data reduction

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• Merge pull request #24 from lanl/sammy_param_datareduction

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Commits on Jan 24, 2025

• add draft orres card

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Commits on Jan 26, 2025

• update orres and imp partial unit test

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• add unit test for LITHI

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Commits on Jan 27, 2025

• add unit test for NE110

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• add unit test for ChannelParameters

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• add final integrate test for orres card

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• expore orrse card at top level

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• Merge pull request #25 from lanl/sammy_orres

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Commits on Jan 28, 2025

• add isotope and unit test

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Commits on Jan 29, 2025

• Merge pull request #26 from lanl/sammy_iso_abund_mass

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Commits on Jan 30, 2025

• add delta and eta

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• add finit and gamma card

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• add Tzero

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• add siabn

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• add SELFI

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• add EFFIC

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• add DELTE

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• add DrcapParameters

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• add NONUN

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• remove special character

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• Merge pull request #27 from lanl/sammy_param_misc

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• add paramagnetic card

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• Merge pull request #28 from lanl/sammy_param_paramag

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Commits on Jan 31, 2025

• enable checks from v2.0

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• add place holder modules for card not used now

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• enable pre-commit

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• adjust exclude pattern

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• Merge pull request #32 from lanl/repo_config_adjust_3rd_attemp

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Commits on Feb 3, 2025

• safe guard not implemented cards

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• safe guard resolution card with not implemented errors

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• safe guard det efficiency card with not implemented error

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Commits on Feb 7, 2025

• start with Burst param

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• add CHANN param

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• deal with edge cases

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• update top level import

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Merge pull request #34 from lanl/sammy_param_user

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• add placeholder for the last card

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• Merge pull request #35 from lanl/sammy_param_last_placeholder

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Commits on Feb 10, 2025

• add to_string method for top level

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Commits on Feb 12, 2025

• add from string and aux func to top param class

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• fix unit basic unit tests

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• fix broadening card str format issue

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Commits on Feb 13, 2025

• fixing logic errors in parsing cards

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• radius card has serious issue, need special attention, disable for now

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Commits on Feb 17, 2025

• Fix radius card bug

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• remove debug print and add usage example notebook

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Commits on Feb 18, 2025

• Merge pull request #37 from lanl/sammy_parfile

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• adding ex012 example in notebook format.

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• fixed bug with reading in isotope header for card 10 in the parfile

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• added some print statements for errors from_string that prints the actual line you are reading

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Commits on Feb 19, 2025

• cut out print statements I added into wrong error message.

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• added repo map (not complete)

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• adding notebooks.

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• deleted notebook

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• made fudge card optional

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• updated repo.map

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• got rid off le=1.0 for abundances in Isotope class.

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• modified isotope.py to not use extended format and git rid of validate_abundance.

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• added a fudge factor line

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• modified print_parameters function.

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Commits on Feb 20, 2025

• modified notebook ex012a.ipynb

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Commits on Feb 21, 2025

• modified notebook

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• adding logger for debugging issues

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• adding os and logger imports to parfile.py

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• moved _log_and_raise_error() to logger.py

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• implemented logging in parfile.py for most functions.

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• adding more logging functionality.

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• added class and function finder.

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• reorged radius.py

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• got rid of logger functionality to find class and function being called

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Commits on Feb 22, 2025

• got rid of get_current_class_and_function()

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• using where_am_i strings for debugging

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• idk!

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• debugging default card reading

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• fixed bug to allow RadiusCard to handle multiple RadiusParameters entries

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• deleted example.

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• added attribustes in doc string of ResonanceEntry

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• finally fixed bugs in radius with printing to file!

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• expanded print function for parameters

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• added notes on parameter libraries.

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• updated debug to info for logging

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• added loggign

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• got rid of RadiusParametersContainer class.

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• adding more detials to parfile_notes.md

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• updated notebook for example 12.

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• got rid of testing abundance validation, since this is no longer true. Deleted extended isotope format since this is unsupported.

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• Fixed bug in IsotopeCard.is_header_line(). Can now identify both "ISOTO" and "NUCLI"

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• Merge branch '39-v20-examples' of github.com:lanl/PLEIADES into 39-v20-examples

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• adjusted functions test_radius.py for new list object for RadiusCard.

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• adjusted test_full_roundtrip to handle list of radiusParameters

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• fixed bug in reading in parFile strings.

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• using unused variables in RadiusCardKeyword class to make overlord "pre-commit.ci" happy

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• more making overlord happy

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• Merge pull request #40 from lanl/39-v20-examples

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