updated MEASUREMENT_QUESTION_PREFIX and MEASUREMENT_ANSWER_PREFIX by …

…adding numbers at the beginning to ensure the sorting will also place the question before the answer
knatarajan-lab · Oct 3, 2024 · b457580 · b457580
1 parent 9d31367
commit b457580
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diff --git a/src/cehrbert_data/const/common.py b/src/cehrbert_data/const/common.py
@@ -29,5 +29,5 @@
 NA = "N/A"
 CONCEPT = "concept"
 CONCEPT_ANCESTOR = "concept_ancestor"
-MEASUREMENT_QUESTION_PREFIX = "Question:"
-MEASUREMENT_ANSWER_PREFIX = "Answer:"
+MEASUREMENT_QUESTION_PREFIX = "1-Question:"
+MEASUREMENT_ANSWER_PREFIX = "2-Answer:"
diff --git a/src/cehrbert_data/decorators/clinical_event_decorator.py b/src/cehrbert_data/decorators/clinical_event_decorator.py
@@ -148,12 +148,12 @@ def _decorate(self, patient_events: DataFrame):
 
         categorical_measurement_events_question = categorical_measurement_events.withColumn(
             "standard_concept_id",
-            F.concat(F.lit("1-"), F.lit(MEASUREMENT_QUESTION_PREFIX), F.col("measurement_components").getItem(0))
+            F.concat(F.lit(MEASUREMENT_QUESTION_PREFIX), F.col("measurement_components").getItem(0))
         ).drop("measurement_components")
 
         categorical_measurement_events_answer = categorical_measurement_events.withColumn(
             "standard_concept_id",
-            F.concat(F.lit("2-"), F.lit(MEASUREMENT_ANSWER_PREFIX), F.col("measurement_components").getItem(1))
+            F.concat(F.lit(MEASUREMENT_ANSWER_PREFIX), F.col("measurement_components").getItem(1))
         ).drop("measurement_components")
 
         other_events = patient_events.where(F.col("domain") != CATEGORICAL_MEASUREMENT)