changed the default concept_value to 0.0

knatarajan-lab · Oct 3, 2024 · 733768e · 733768e
1 parent 07e7a1e
commit 733768e
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/cehrbert_data/utils/spark_utils.py b/src/cehrbert_data/utils/spark_utils.py
@@ -177,7 +177,7 @@ def join_domain_tables(domain_tables: List[DataFrame]) -> DataFrame:
                 filtered_domain_table["visit_occurrence_id"],
                 F.lit(table_domain_field).alias("domain"),
                 F.concat(F.lit(table_domain_field), F.lit("-"), F.col("domain_id")).alias("event_group_id"),
-                F.lit(-1).alias("concept_value"),
+                F.lit(0.0).alias("concept_value"),
                 unit_udf.alias("unit"),
             ).distinct()
 
@@ -1411,7 +1411,7 @@ def process_measurement(
             m.visit_occurrence_id,
             'categorical_measurement' AS domain,
             CAST(NULL AS STRING) AS unit,
-            -1.0 AS concept_value,
+            0.0 AS concept_value,
             CONCAT('measurement-', CAST(m.measurement_id AS STRING)) AS event_group_id
         FROM measurement AS m
         WHERE EXISTS (