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feat: SJIP-868 fix request body #194

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merged 1 commit into from
Sep 6, 2024
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feat: SJIP-868 fix request body #194

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6 changes: 3 additions & 3 deletions src/app.test.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -600,7 +600,7 @@ describe('Express app (without Arranger)', () => {
});

const requestBody = {
gene_symbol: 'LINC01881',
ensembl_gene_id: 'ENSG00000272368.2',
};

it('should return 403 if no Authorization header', () =>
Expand Down Expand Up @@ -640,7 +640,7 @@ describe('Express app (without Arranger)', () => {
.set({ Authorization: `Bearer ${token}` })
.expect(200, sampleGeneExp);
expect((fetchSampleGeneExp as jest.Mock).mock.calls.length).toEqual(1);
expect((fetchSampleGeneExp as jest.Mock).mock.calls[0][0]).toEqual('LINC01881');
expect((fetchSampleGeneExp as jest.Mock).mock.calls[0][0]).toEqual('ENSG00000272368.2');
});

it('should return 500 if Authorization header contains valid token but an error occurs', async () => {
Expand All @@ -658,7 +658,7 @@ describe('Express app (without Arranger)', () => {
.set({ Authorization: `Bearer ${token}` })
.expect(500, { error: 'Internal Server Error' });
expect((fetchSampleGeneExp as jest.Mock).mock.calls.length).toEqual(1);
expect((fetchSampleGeneExp as jest.Mock).mock.calls[0][0]).toEqual('LINC01881');
expect((fetchSampleGeneExp as jest.Mock).mock.calls[0][0]).toEqual('ENSG00000272368.2');
});
});

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4 changes: 2 additions & 2 deletions src/app.ts
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Expand Up @@ -156,8 +156,8 @@ export default (keycloak: Keycloak, getProject: (projectId: string) => ArrangerP
});

app.postAsync('/transcriptomics/sampleGeneExp', keycloak.protect(), async (req, res) => {
const gene_symbol: string = req.body.gene_symbol;
const data = await fetchSampleGeneExp(gene_symbol);
const ensembl_gene_id: string = req.body.ensembl_gene_id;
const data = await fetchSampleGeneExp(ensembl_gene_id);

res.json(data);
});
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