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Imaris import support #57
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akhanf
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TODO: - get metadata from the ims file - make the intermediate zarr another rule perhaps
also testing new spimprep-deps container with this dependency added
Had issues with some of the non-serializable datasets (like metadata strings) but those don't need to be copied here..
I compared with rechunking at the copy stage, but that was much slower..
better for parallelization
note: need to enable this for non-imaris files too also, some of the remote storage features may be broken
use zipstore for hdf5 to zarr
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Adds import support for Imaris prestitched files. Uses zarr to read each channel directly from ims (hdf5) to zarr zipstore, then converts those to ome zarr.
This also updates in-place creation of the ome-zarr zipstore (if zipstores are enabled), instead of writing to a DirectoryStore then using 7zip to make it a zipstore.