--- re-building ‘quality-control.Rmd’ using rmarkdown

processing vignette 'dimensionality-reduction.Rmd' failed with diagnostics:

Vignette re-building failed.

Failed to install 'tidytof' from local:

Process completed with exit code 1.

Test failures

R CMD check found ERRORs

Process completed with exit code 1.

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

harfbuzz 9.0.0 is already installed and up-to-date. To reinstall 9.0.0, run: brew reinstall harfbuzz

macOS's Gatekeeper has been disabled for this Cask

No files were found with the provided path: check. No artifacts will be uploaded.

dependency ‘rjson’ is not available

The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "03. Quality control", and the latter is "Quality control". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

dependency 'rjson' is not available