v1.8.0

Improvements

• SV phasing is now supported. Supply dysgu with a 'haplotagged' bam file (with HP and PS tags for reads) and dysgu will automatically phase output SVs. This results in a large increase in performance for long reads (see PacBio benchmark here: https://github.com/kcleal/SV_Benchmark_CMRG_GIAB)
• Added AF allele frequency to FORMAT column #117
• New progressive merge method when using dysgu merge that allows better scaling to large cohorts. This can be set using --merge-method [ auto | all-vs-all | progressive ], default is auto #82
• Improvements to merging SVs during calling

Fixes

• Fixed DUP sequences ending up in REF column #123