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1. bioPatternsg bioPatternsg Public

   This is an application that builts gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resource…

   CSS 1 1

2. bio_ner_tagger bio_ner_tagger Public

   An experiment to tag ner entities related with biological molecular species using spaCy, fine-tuning a spacy's pipeline, and building a knowledge base of regulatory events, in order to model a gene…

   Prolog 1

3. Predictor Predictor Public

   A system to infer genetic structures for DNA sequences. The system use concepts (rules or models) derived from machine learning tecniques and supports those structures with possible biological regu…

   Java

4. geneARFF geneARFF Public

   An application to generate .arff files describing splicing sites from curated DNA sequences.

   Java

5. jEnsemblTest jEnsemblTest Public

   An API to test JEnsembl facilities to acces the Ensembl database resources.

   Java

6. classDNA classDNA Public

   An application to define the coordinates of structural sites in DNA sequences, using models trained with the Weka toolkit.

   Java 2