Automated build.

jeksterslab · Dec 15, 2024 · 570bb1c · 570bb1c
1 parent 8a10cb2
commit 570bb1c
Showing 25 changed files with 5,543 additions and 24 deletions.
diff --git a/.setup/build/cTMed.pdf b/.setup/build/cTMed.pdf
diff --git a/.setup/build/cTMed_1.0.2.9000.tar.gz b/.setup/build/cTMed_1.0.2.9000.tar.gz
diff --git a/.setup/build/cTMed_1.0.3.tar.gz b/.setup/build/cTMed_1.0.3.tar.gz
diff --git a/.setup/latex/bib/quarto.bib b/.setup/latex/bib/quarto.bib
diff --git a/.setup/latex/pdf/.gitignore b/.setup/latex/pdf/.gitignore
@@ -0,0 +1,5 @@
+*
+*/
+!*.pdf
+!.gitignore
+!bib.bib
diff --git a/.setup/latex/pdf/bib.bib b/.setup/latex/pdf/bib.bib
diff --git a/.setup/latex/pdf/cTMed-001-description.pdf b/.setup/latex/pdf/cTMed-001-description.pdf
diff --git a/.setup/latex/pdf/cTMed-999-session.pdf b/.setup/latex/pdf/cTMed-999-session.pdf
diff --git a/.setup/latex/pdf/cTMed-zzz-references.pdf b/.setup/latex/pdf/cTMed-zzz-references.pdf
diff --git a/.setup/latex/pdf/cTMed-zzz-tests-benchmark.pdf b/.setup/latex/pdf/cTMed-zzz-tests-benchmark.pdf
diff --git a/.setup/latex/pdf/cTMed-zzz-tests-external.pdf b/.setup/latex/pdf/cTMed-zzz-tests-external.pdf
diff --git a/.setup/latex/pdf/cTMed-zzz-tests-internal.pdf b/.setup/latex/pdf/cTMed-zzz-tests-internal.pdf
diff --git a/.setup/latex/pdf/cTMed-zzz-tests-staging.pdf b/.setup/latex/pdf/cTMed-zzz-tests-staging.pdf
diff --git a/CITATION.cff b/CITATION.cff
@@ -8,7 +8,7 @@ message: 'To cite package "cTMed" in publications use:'
 type: software
 license: GPL-3.0-or-later
 title: 'cTMed: Continuous Time Mediation'
-version: 1.0.2.9000
+version: 1.0.3
 identifiers:
 - type: doi
   value: 10.32614/CRAN.package.cTMed
@@ -31,7 +31,7 @@ preferred-citation:
     email: r.jeksterslab@gmail.com
     orcid: https://orcid.org/0000-0003-4818-8420
   year: '2024'
-  notes: R package version 1.0.2.9000
+  notes: R package version 1.0.3
 repository: https://CRAN.R-project.org/package=cTMed
 repository-code: https://github.com/jeksterslab/cTMed
 url: https://jeksterslab.github.io/cTMed/

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: cTMed
 Title: Continuous Time Mediation
-Version: 1.0.2.9000
+Version: 1.0.3
 Authors@R: 
     person(given = "Ivan Jacob Agaloos",
            family = "Pesigan",

diff --git a/NEWS.md b/NEWS.md
@@ -1,6 +1,6 @@
-# cTMed 1.0.2.9000
+# cTMed 1.0.3
 
-* Latest development version.
+* Depends: R (>= 4.2.0)
 
 # cTMed 1.0.2
 

diff --git a/vignettes/fig-vignettes-med-mc-1.png b/vignettes/fig-vignettes-med-mc-1.png
diff --git a/vignettes/fig-vignettes-med-mc-2.png b/vignettes/fig-vignettes-med-mc-2.png
diff --git a/vignettes/fig-vignettes-med-mc-3.png b/vignettes/fig-vignettes-med-mc-3.png
diff --git a/vignettes/fig-vignettes-med-std-mc-1.png b/vignettes/fig-vignettes-med-std-mc-1.png
diff --git a/vignettes/fig-vignettes-med-std-mc-2.png b/vignettes/fig-vignettes-med-std-mc-2.png
diff --git a/vignettes/fig-vignettes-med-std-mc-3.png b/vignettes/fig-vignettes-med-std-mc-3.png
diff --git a/vignettes/fit-ct-var-dynr.Rmd b/vignettes/fit-ct-var-dynr.Rmd
@@ -297,8 +297,8 @@ fit <- dynr.cook(
 #> 
 #> Doing end processing
 #> Successful trial
-#> Total Time: 4.676568 
-#> Backend Time: 4.666937
+#> Total Time: 4.882773 
+#> Backend Time: 4.873903
 summary(fit)
 #> Coefficients:
 #>            Estimate Std. Error t value  ci.lower  ci.upper Pr(>|t|)    

diff --git a/vignettes/fit-ct-var-mx.Rmd b/vignettes/fit-ct-var-mx.Rmd
@@ -531,8 +531,8 @@ summary(fit)
 #> RMSEA:  0  [95% CI (NA, NA)]
 #> Prob(RMSEA <= 0.05): NA
 #> To get additional fit indices, see help(mxRefModels)
-#> timestamp: 2024-12-15 19:22:55 
-#> Wall clock time: 174.3228 secs 
+#> timestamp: 2024-12-15 21:25:10 
+#> Wall clock time: 174.3748 secs 
 #> optimizer:  SLSQP 
 #> OpenMx version number: 2.21.13 
 #> Need help?  See help(mxSummary)

diff --git a/vignettes/session.Rmd b/vignettes/session.Rmd
@@ -43,7 +43,7 @@ sessionInfo()
 #> [1] stats     graphics  grDevices utils     datasets  methods   base     
 #> 
 #> other attached packages:
-#> [1] cTMed_1.0.2.9000    OpenMx_2.21.13      dynr_0.1.16-109    
+#> [1] cTMed_1.0.3         OpenMx_2.21.13      dynr_0.1.16-109    
 #> [4] ggplot2_3.5.1       simStateSpace_1.2.3
 #> 
 #> loaded via a namespace (and not attached):
@@ -83,7 +83,7 @@ sessionInfo()
 ``` r
 installed.packages()[, c("Package", "Version")]
 #>                   Package             Version      
-#> cTMed             "cTMed"             "1.0.2.9000" 
+#> cTMed             "cTMed"             "1.0.3"      
 #> abind             "abind"             "1.4-8"      
 #> arm               "arm"               "1.14-4"     
 #> arrow             "arrow"             "17.0.0.1"   
@@ -519,7 +519,7 @@ installed.packages()[, c("Package", "Version")]
 
 ```
 #>                total        used        free      shared  buff/cache   available
-#> Mem:            23Gi       3.4Gi        16Gi       523Mi       2.8Gi        18Gi
+#> Mem:            23Gi       4.4Gi        15Gi       755Mi       3.1Gi        17Gi
 #> Swap:           11Gi          0B        11Gi
-#> Total:          34Gi       3.4Gi        28Gi
+#> Total:          34Gi       4.4Gi        27Gi
 ```