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diff --git a/manual/main/en/cif2x-usersguide.pdf b/manual/main/en/cif2x-usersguide.pdf
diff --git a/manual/main/en/html/.buildinfo b/manual/main/en/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 72c0a28eb18f69ebf9ac062b2e0428f5
+config: caf48bd67c692809c7c38bb4fda3f4df
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/manual/main/en/html/_sources/cif2x/about/index.rst.txt b/manual/main/en/html/_sources/cif2x/about/index.rst.txt
@@ -24,10 +24,6 @@ Contributors
 
 This software was developed by the following contributors.
 
--  ver.1.0.0 (Released on 2024/03/19)
-
--  ver.1.0-alpha (Released on 2023/12/28)
-
    -  Developers
 
       -  Kazuyoshi Yoshimi (The Instutite for Solid State Physics, The University of Tokyo)
@@ -50,6 +46,14 @@ This software was developed by the following contributors.
 
       -  Taisuke Ozaki (The Instutite for Solid State Physics, The University of Tokyo)
 
+Release history
+----------------------------------------------------------------
+
+  ver.1.0.0
+    Released on 2024/03/19
+
+  ver.1.0-alpha
+    Released on 2023/12/28
 
 Copyright
 ----------------------------------------------------------------

diff --git a/manual/main/en/html/_static/documentation_options.js b/manual/main/en/html/_static/documentation_options.js
@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '1.0.0',
+    VERSION: '1.0.1',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/manual/main/en/html/cif2x/about/index.html b/manual/main/en/html/cif2x/about/index.html
@@ -5,10 +5,10 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>1. Introduction &#8212; cif2x Users Guide 1.0.0 documentation</title>
+    <title>1. Introduction &#8212; cif2x Users Guide 1.0.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=94bc0932" />
-    <script src="../../_static/documentation_options.js?v=8d563738"></script>
+    <script src="../../_static/documentation_options.js?v=292eb321"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"></script>
@@ -52,10 +52,8 @@ <h2><span class="section-number">1.2. </span>License<a class="headerlink" href="
 <section id="contributors">
 <h2><span class="section-number">1.3. </span>Contributors<a class="headerlink" href="#contributors" title="Link to this heading">¶</a></h2>
 <p>This software was developed by the following contributors.</p>
-<ul class="simple">
-<li><p>ver.1.0.0 (Released on 2024/03/19)</p></li>
-<li><p>ver.1.0-alpha (Released on 2023/12/28)</p>
-<ul>
+<blockquote>
+<div><ul class="simple">
 <li><p>Developers</p>
 <ul>
 <li><p>Kazuyoshi Yoshimi (The Instutite for Solid State Physics, The University of Tokyo)</p></li>
@@ -74,16 +72,26 @@ <h2><span class="section-number">1.3. </span>Contributors<a class="headerlink" h
 </ul>
 </li>
 </ul>
-</li>
-</ul>
+</div></blockquote>
+</section>
+<section id="release-history">
+<h2><span class="section-number">1.4. </span>Release history<a class="headerlink" href="#release-history" title="Link to this heading">¶</a></h2>
+<blockquote>
+<div><dl class="simple">
+<dt>ver.1.0.0</dt><dd><p>Released on 2024/03/19</p>
+</dd>
+<dt>ver.1.0-alpha</dt><dd><p>Released on 2023/12/28</p>
+</dd>
+</dl>
+</div></blockquote>
 </section>
 <section id="copyright">
-<h2><span class="section-number">1.4. </span>Copyright<a class="headerlink" href="#copyright" title="Link to this heading">¶</a></h2>
+<h2><span class="section-number">1.5. </span>Copyright<a class="headerlink" href="#copyright" title="Link to this heading">¶</a></h2>
 <p>© <em>2023- The University of Tokyo. All rights reserved.</em></p>
 <p>This software was developed with the support of “Project for advancement of software usability in materials science” of The Institute for Solid State Physics, The University of Tokyo.</p>
 </section>
 <section id="operating-environment">
-<h2><span class="section-number">1.5. </span>Operating environment<a class="headerlink" href="#operating-environment" title="Link to this heading">¶</a></h2>
+<h2><span class="section-number">1.6. </span>Operating environment<a class="headerlink" href="#operating-environment" title="Link to this heading">¶</a></h2>
 <p>This tool was tested on the following platforms:</p>
 <ul class="simple">
 <li><p>Ubuntu Linux + python3</p></li>

diff --git a/manual/main/en/html/cif2x/appendix/index.html b/manual/main/en/html/cif2x/appendix/index.html
@@ -5,10 +5,10 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>6. Extension guide &#8212; cif2x Users Guide 1.0.0 documentation</title>
+    <title>6. Extension guide &#8212; cif2x Users Guide 1.0.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=94bc0932" />
-    <script src="../../_static/documentation_options.js?v=8d563738"></script>
+    <script src="../../_static/documentation_options.js?v=292eb321"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />

diff --git a/manual/main/en/html/cif2x/basic-usage.html b/manual/main/en/html/cif2x/basic-usage.html
@@ -5,10 +5,10 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>2. Installation and basic usage &#8212; cif2x Users Guide 1.0.0 documentation</title>
+    <title>2. Installation and basic usage &#8212; cif2x Users Guide 1.0.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=94bc0932" />
-    <script src="../_static/documentation_options.js?v=8d563738"></script>
+    <script src="../_static/documentation_options.js?v=292eb321"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />

diff --git a/manual/main/en/html/cif2x/command/index.html b/manual/main/en/html/cif2x/command/index.html
@@ -5,10 +5,10 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>4. Command reference &#8212; cif2x Users Guide 1.0.0 documentation</title>
+    <title>4. Command reference &#8212; cif2x Users Guide 1.0.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=94bc0932" />
-    <script src="../../_static/documentation_options.js?v=8d563738"></script>
+    <script src="../../_static/documentation_options.js?v=292eb321"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />

diff --git a/manual/main/en/html/cif2x/filespec/index.html b/manual/main/en/html/cif2x/filespec/index.html
@@ -5,10 +5,10 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>5. File format &#8212; cif2x Users Guide 1.0.0 documentation</title>
+    <title>5. File format &#8212; cif2x Users Guide 1.0.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=94bc0932" />
-    <script src="../../_static/documentation_options.js?v=8d563738"></script>
+    <script src="../../_static/documentation_options.js?v=292eb321"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"></script>

diff --git a/manual/main/en/html/cif2x/index.html b/manual/main/en/html/cif2x/index.html
@@ -5,10 +5,10 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>Input file generator for first-principles calculations (cif2x) &#8212; cif2x Users Guide 1.0.0 documentation</title>
+    <title>Input file generator for first-principles calculations (cif2x) &#8212; cif2x Users Guide 1.0.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=94bc0932" />
-    <script src="../_static/documentation_options.js?v=8d563738"></script>
+    <script src="../_static/documentation_options.js?v=292eb321"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
@@ -40,8 +40,9 @@ <h1>Input file generator for first-principles calculations (cif2x)<a class="head
 <li class="toctree-l2"><a class="reference internal" href="about/index.html#what-is-cif2x">1.1. What is cif2x?</a></li>
 <li class="toctree-l2"><a class="reference internal" href="about/index.html#license">1.2. License</a></li>
 <li class="toctree-l2"><a class="reference internal" href="about/index.html#contributors">1.3. Contributors</a></li>
-<li class="toctree-l2"><a class="reference internal" href="about/index.html#copyright">1.4. Copyright</a></li>
-<li class="toctree-l2"><a class="reference internal" href="about/index.html#operating-environment">1.5. Operating environment</a></li>
+<li class="toctree-l2"><a class="reference internal" href="about/index.html#release-history">1.4. Release history</a></li>
+<li class="toctree-l2"><a class="reference internal" href="about/index.html#copyright">1.5. Copyright</a></li>
+<li class="toctree-l2"><a class="reference internal" href="about/index.html#operating-environment">1.6. Operating environment</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="basic-usage.html">2. Installation and basic usage</a></li>

diff --git a/manual/main/en/html/cif2x/tutorial/index.html b/manual/main/en/html/cif2x/tutorial/index.html
@@ -5,10 +5,10 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>3. Tutorial &#8212; cif2x Users Guide 1.0.0 documentation</title>
+    <title>3. Tutorial &#8212; cif2x Users Guide 1.0.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=94bc0932" />
-    <script src="../../_static/documentation_options.js?v=8d563738"></script>
+    <script src="../../_static/documentation_options.js?v=292eb321"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />

diff --git a/manual/main/en/html/genindex.html b/manual/main/en/html/genindex.html
@@ -4,10 +4,10 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Index &#8212; cif2x Users Guide 1.0.0 documentation</title>
+    <title>Index &#8212; cif2x Users Guide 1.0.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=94bc0932" />
-    <script src="_static/documentation_options.js?v=8d563738"></script>
+    <script src="_static/documentation_options.js?v=292eb321"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="#" />

diff --git a/manual/main/en/html/index.html b/manual/main/en/html/index.html
@@ -5,10 +5,10 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>Cif2x Users Guide &#8212; cif2x Users Guide 1.0.0 documentation</title>
+    <title>Cif2x Users Guide &#8212; cif2x Users Guide 1.0.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=94bc0932" />
-    <script src="_static/documentation_options.js?v=8d563738"></script>
+    <script src="_static/documentation_options.js?v=292eb321"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />

diff --git a/manual/main/en/html/search.html b/manual/main/en/html/search.html
@@ -4,11 +4,11 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Search &#8212; cif2x Users Guide 1.0.0 documentation</title>
+    <title>Search &#8212; cif2x Users Guide 1.0.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=94bc0932" />
 
-    <script src="_static/documentation_options.js?v=8d563738"></script>
+    <script src="_static/documentation_options.js?v=292eb321"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/searchtools.js"></script>