Bump pre-commit/action from 3.0.0 to 3.0.1 #72
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| name: "Tests" | |
| on: | |
| push: | |
| branches-ignore: | |
| - "dependabot/**" | |
| - "sourcery/**" | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| pre-commit: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: Run pre-commit | |
| uses: pre-commit/[email protected] | |
| create-test-matrix: | |
| name: Create Notebook List | |
| runs-on: ubuntu-latest | |
| needs: [pre-commit] | |
| outputs: | |
| notebook-list: ${{ steps.notebooks.outputs.notebook-list }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Set notebook list | |
| id: notebooks | |
| shell: python | |
| run: | | |
| import json | |
| import os | |
| from pathlib import Path | |
| block_list =[ | |
| "BRC_NIR-global-case-study-pretty", | |
| "BRC_VIS_NIR-target-case-study-pretty", | |
| "BRC_VIS-global-case-study-pretty", | |
| "CK-case-study", | |
| "oc_tol", | |
| "coc_tol", | |
| "oc_coc_tol_target", | |
| "oc_coc_tol_target_refined", | |
| "PCP-case-study", | |
| "PCP-case-study-pretty", | |
| "BE-case-study-pretty", | |
| "Spirulina-case-study", | |
| "CKq-case-study", | |
| "CKuq-case-study", | |
| "PS1_pyglotaran_equalarea", | |
| "ocg_dcm", | |
| "ocg_dcm-refined2", | |
| "PAL_open_global-pretty", | |
| "PAL_closed_global-pretty", | |
| "PAL_open_closed_target_exercise" | |
| ] | |
| notebook_paths = [] | |
| for notebook_path in Path().rglob("*.ipynb"): | |
| if notebook_path.stem not in block_list: | |
| notebook_paths.append( | |
| { | |
| "name": notebook_path.stem, | |
| "path": notebook_path.resolve().as_posix(), | |
| } | |
| ) | |
| with open(os.getenv("GITHUB_OUTPUT"), "a", encoding="utf8") as f: | |
| f.writelines([f"notebook-list={json.dumps(notebook_paths)}"]) | |
| run-tests: | |
| name: "Test ${{ matrix.notebook_path.name }}" | |
| runs-on: ubuntu-latest | |
| needs: [create-test-matrix] | |
| strategy: | |
| matrix: | |
| notebook_path: ${{fromJson(needs.create-test-matrix.outputs.notebook-list)}} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install test dependencies | |
| run: | | |
| pip install wheel | |
| pip install -r .github/test-requirements.txt | |
| - name: Testing ${{ matrix.notebook_path.name }} | |
| run: python -m pytest --nbval-lax ${{ matrix.notebook_path.path }} | |
| - name: Installed packages | |
| if: always() | |
| run: | | |
| pip freeze |