modify preprocess

inoue0426 · Apr 12, 2024 · c5db20b · c5db20b
1 parent f572c15
commit c5db20b
Showing 1 changed file with 3 additions and 4 deletions.
diff --git a/Tutorial.ipynb b/Tutorial.ipynb
@@ -1665,7 +1665,6 @@
     "tmp = np.sign(df)\n",
     "cols = (np.sum(tmp) > int((df.shape[0])*0.05))\n",
     "rows = (np.sum(tmp, axis=1) > int((df.shape[1])*0.05))\n",
-    "df = np.log(df.loc[rows, cols] + 1)\n",
     "df = scprep.normalize.library_size_normalize(df)    \n",
     "df = scprep.transform.sqrt(df)\n",
     "df"
@@ -1747,9 +1746,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "scBiGCN",
+   "display_name": "llm",
    "language": "python",
-   "name": "scbigcn"
+   "name": "llm"
   },
   "language_info": {
    "codemirror_mode": {
@@ -1761,7 +1760,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.13"
+   "version": "3.10.14"
   }
  },
  "nbformat": 4,