[pre-commit] auto fixes from pre-commit hooks

src/pypulseq/make_adc.py

@@ -70,7 +70,7 @@ def make_adc(
 
     if adc.dead_time > adc.delay:
         warn(
-            f'Specified ADC delay {adc.delay*1e6:.2f} us is less than the dead time {adc.dead_time*1e6:.0f} us. Delay was increased to the dead time.',
+            f'Specified ADC delay {adc.delay * 1e6:.2f} us is less than the dead time {adc.dead_time * 1e6:.0f} us. Delay was increased to the dead time.',
             stacklevel=2,
         )
         adc.delay = adc.dead_time

src/pypulseq/make_adiabatic_pulse.py

@@ -215,7 +215,7 @@ def make_adiabatic_pulse(
     rf.use = use if use != '' else 'inversion'
     if rf.dead_time > rf.delay:
         warn(
-            f'Specified RF delay {rf.delay*1e6:.2f} us is less than the dead time {rf.dead_time*1e6:.0f} us. Delay was increased to the dead time.',
+            f'Specified RF delay {rf.delay * 1e6:.2f} us is less than the dead time {rf.dead_time * 1e6:.0f} us. Delay was increased to the dead time.',
             stacklevel=2,
         )
         rf.delay = rf.dead_time

src/pypulseq/make_arbitrary_rf.py

@@ -119,7 +119,7 @@ def make_arbitrary_rf(
 
     if rf.dead_time > rf.delay:
         warn(
-            f'Specified RF delay {rf.delay*1e6:.2f} us is less than the dead time {rf.dead_time*1e6:.0f} us. Delay was increased to the dead time.',
+            f'Specified RF delay {rf.delay * 1e6:.2f} us is less than the dead time {rf.dead_time * 1e6:.0f} us. Delay was increased to the dead time.',
             stacklevel=2,
         )
         rf.delay = rf.dead_time

src/pypulseq/make_block_pulse.py

@@ -66,7 +66,7 @@ def make_block_pulse(
 
     valid_use_pulses = get_supported_rf_uses()
     if use != '' and use not in valid_use_pulses:
-        raise ValueError('Invalid use parameter. ' f'Must be one of {valid_use_pulses}. Passed: {use}')
+        raise ValueError(f'Invalid use parameter. Must be one of {valid_use_pulses}. Passed: {use}')
 
     if duration is None and bandwidth is None:
         warn('Using default 4 ms duration for block pulse.')
@@ -110,7 +110,7 @@ def make_block_pulse(
 
     if rf.dead_time > rf.delay:
         warn(
-            f'Specified RF delay {rf.delay*1e6:.2f} us is less than the dead time {rf.dead_time*1e6:.0f} us. Delay was increased to the dead time.',
+            f'Specified RF delay {rf.delay * 1e6:.2f} us is less than the dead time {rf.dead_time * 1e6:.0f} us. Delay was increased to the dead time.',
             stacklevel=2,
         )
         rf.delay = rf.dead_time

src/pypulseq/make_gauss_pulse.py

@@ -125,7 +125,7 @@ def make_gauss_pulse(
 
     if rf.dead_time > rf.delay:
         warn(
-            f'Specified RF delay {rf.delay*1e6:.2f} us is less than the dead time {rf.dead_time*1e6:.0f} us. Delay was increased to the dead time.',
+            f'Specified RF delay {rf.delay * 1e6:.2f} us is less than the dead time {rf.dead_time * 1e6:.0f} us. Delay was increased to the dead time.',
             stacklevel=2,
         )
         rf.delay = rf.dead_time

src/pypulseq/make_sigpy_pulse.py

@@ -137,7 +137,7 @@ def sigpy_n_seq(
 
     if rfp.dead_time > rfp.delay:
         warn(
-            f'Specified RF delay {rfp.delay*1e6:.2f} us is less than the dead time {rfp.dead_time*1e6:.0f} us. Delay was increased to the dead time.',
+            f'Specified RF delay {rfp.delay * 1e6:.2f} us is less than the dead time {rfp.dead_time * 1e6:.0f} us. Delay was increased to the dead time.',
             stacklevel=2,
         )
         rfp.delay = rfp.dead_time

src/pypulseq/make_sinc_pulse.py

@@ -125,7 +125,7 @@ def make_sinc_pulse(
 
     if rf.dead_time > rf.delay:
         warn(
-            f'Specified RF delay {rf.delay*1e6:.2f} us is less than the dead time {rf.dead_time*1e6:.0f} us. Delay was increased to the dead time.',
+            f'Specified RF delay {rf.delay * 1e6:.2f} us is less than the dead time {rf.dead_time * 1e6:.0f} us. Delay was increased to the dead time.',
             stacklevel=2,
         )
         rf.delay = rf.dead_time

src/pypulseq/make_trapezoid.py

@@ -230,12 +230,12 @@ def make_trapezoid(
 
     if abs(amplitude2) / rise_time > max_slew:
         raise ValueError(
-            f'Refined slew rate ({abs(amplitude2)/rise_time:0.0f} Hz/m/s) for ramp up is larger than max ({max_slew:0.0f} Hz/m/s).'
+            f'Refined slew rate ({abs(amplitude2) / rise_time:0.0f} Hz/m/s) for ramp up is larger than max ({max_slew:0.0f} Hz/m/s).'
         )
 
     if abs(amplitude2) / fall_time > max_slew:
         raise ValueError(
-            f'Refined slew rate ({abs(amplitude2)/fall_time:0.0f} Hz/m/s) for ramp down is larger than max ({max_slew:0.0f} Hz/m/s).'
+            f'Refined slew rate ({abs(amplitude2) / fall_time:0.0f} Hz/m/s) for ramp down is larger than max ({max_slew:0.0f} Hz/m/s).'
         )
 
     grad = SimpleNamespace()

src/pypulseq/opts.py

@@ -76,7 +76,7 @@ def __init__(
 
         if grad_unit not in valid_grad_units:
             raise ValueError(
-                f"Invalid gradient unit. Must be one of 'Hz/m', 'mT/m' or 'rad/ms/mm'. " f'Passed: {grad_unit}'
+                f"Invalid gradient unit. Must be one of 'Hz/m', 'mT/m' or 'rad/ms/mm'. Passed: {grad_unit}"
             )
 
         if slew_unit not in valid_slew_units:

src/pypulseq/utils/safe_pns_prediction.py

@@ -382,9 +382,9 @@ def safe_plot(pns, dt=None, envelope=True, envelope_points=500):
 
     plt.legend(
         [
-            f'X ({max(pns[:,0]):0.0f}%)',
-            f'Y ({max(pns[:,1]):0.0f}%)',
-            f'Z ({max(pns[:,2]):0.0f}%)',
+            f'X ({max(pns[:, 0]):0.0f}%)',
+            f'Y ({max(pns[:, 1]):0.0f}%)',
+            f'Z ({max(pns[:, 2]):0.0f}%)',
             f'nrm ({max(pnsnorm):0.0f}%)',
         ],
         loc='best',

tests/test_sequence.py

@@ -325,15 +325,15 @@ def test_writeread(self, seq_func, tmp_path, compare_seq_file):
             assert a is not None and b is not None
 
             # TODO: C[0] is slope of gradient, on the order of max_slew? So expect abs rounding errors in range of 1e2?
-            assert a.x == Approx(
-                b.x, abs=1e-5, rel=1e-5
-            ), f'Time axis of gradient waveform for channel {channel} does not match'
-            assert a.c[0] == Approx(
-                b.c[0], abs=1e2, rel=1e-3
-            ), f'First-order coefficients of piecewise-polynomial gradient waveform for channel {channel} do not match'
-            assert a.c[1] == Approx(
-                b.c[1], abs=1e-5, rel=1e-5
-            ), f'Zero-order coefficients of piecewise-polynomial gradient waveform for channel {channel} do not match'
+            assert a.x == Approx(b.x, abs=1e-5, rel=1e-5), (
+                f'Time axis of gradient waveform for channel {channel} does not match'
+            )
+            assert a.c[0] == Approx(b.c[0], abs=1e2, rel=1e-3), (
+                f'First-order coefficients of piecewise-polynomial gradient waveform for channel {channel} do not match'
+            )
+            assert a.c[1] == Approx(b.c[1], abs=1e-5, rel=1e-5), (
+                f'Zero-order coefficients of piecewise-polynomial gradient waveform for channel {channel} do not match'
+            )
 
         # Restore RF use for k-space calculation
         for block_counter in seq.block_events:
@@ -372,25 +372,25 @@ def test_recreate(self, seq_func):  # noqa: ARG002
         # Test for approximate equality of all blocks
         assert list(seq2.block_events.keys()) == list(seq.block_events.keys()), 'Sequence block IDs are not identical'
         for block_counter in seq.block_events:
-            assert seq2.get_block(block_counter) == Approx(
-                seq.get_block(block_counter), abs=1e-9, rel=1e-9
-            ), f'Block {block_counter} does not match'
+            assert seq2.get_block(block_counter) == Approx(seq.get_block(block_counter), abs=1e-9, rel=1e-9), (
+                f'Block {block_counter} does not match'
+            )
 
         # Test for approximate equality of all gradient waveforms
         for a, b, channel in zip(seq2.get_gradients(), seq.get_gradients(), ['x', 'y', 'z']):
             if a is None and b is None:
                 continue
             assert a is not None and b is not None
 
-            assert a.x == Approx(
-                b.x, abs=1e-9, rel=1e-9
-            ), f'Time axis of gradient waveform for channel {channel} does not match'
-            assert a.c[0] == Approx(
-                b.c[0], abs=1e-9, rel=1e-9
-            ), f'First-order coefficients of piecewise-polynomial gradient waveform for channel {channel} do not match'
-            assert a.c[1] == Approx(
-                b.c[1], abs=1e-9, rel=1e-9
-            ), f'Zero-order coefficients of piecewise-polynomial gradient waveform for channel {channel} do not match'
+            assert a.x == Approx(b.x, abs=1e-9, rel=1e-9), (
+                f'Time axis of gradient waveform for channel {channel} does not match'
+            )
+            assert a.c[0] == Approx(b.c[0], abs=1e-9, rel=1e-9), (
+                f'First-order coefficients of piecewise-polynomial gradient waveform for channel {channel} do not match'
+            )
+            assert a.c[1] == Approx(b.c[1], abs=1e-9, rel=1e-9), (
+                f'Zero-order coefficients of piecewise-polynomial gradient waveform for channel {channel} do not match'
+            )
 
         # Test for approximate equality of kspace calculation
         assert seq2.calculate_kspace() == Approx(seq.calculate_kspace(), abs=1e-6, nan_ok=True)