add test files for prod

icgc-argo · Nov 30, 2023 · ea73002 · ea73002
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commit ea73002
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diff --git a/argo-data-submission-wf/tests/input/prod_experiment-fq.v2.tsv b/argo-data-submission-wf/tests/input/prod_experiment-fq.v2.tsv
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+type	submitter_sequencing_experiment_id	program_id	submitter_donor_id	submitter_specimen_id	submitter_sample_id	submitter_matched_normal_sample_id	sequencing_center	platform	platform_model	experimental_strategy	sequencing_date	read_group_count
+sequencing_experiment	SubWf_exp_02_FASTQ_input	TEST-CA	TEST_SUBMITTER_DONOR_ID_zzespofnsa	TEST_SUBMITTER_SPECIMEN_ID_zzespofnsaT1	TEST_SUBMITTER_SAMPLE_ID_zzespofnsaT1	TEST_SUBMITTER_SAMPLE_ID_zzespofnsaN1	EXT	ILLUMINA	HiSeq 2000	WGS	2014-12-12	3
diff --git a/argo-data-submission-wf/tests/input/prod_file-fq.v2.tsv b/argo-data-submission-wf/tests/input/prod_file-fq.v2.tsv
@@ -0,0 +1,7 @@
+type	name	format	size	md5sum	path
+file	C0HVY.2_r1.fq.gz	FASTQ	2040	c4971f805930e9e31e1c45314c652d3c	input/C0HVY.2_r1.fq.gz
+file	C0HVY.2_r2.fq.gz	FASTQ	2042	f60026e682bf55f014c84d494112aa13	input/C0HVY.2_r2.fq.gz
+file	D0RE2.1_r1.fq.gz	FASTQ	2309	835b35f6e7f8263636fce4224b1aca69	input/D0RE2.1_r1.fq.gz
+file	D0RE2.1_r2.fq.gz	FASTQ	2365	23d030ddba2916f8430b13234e3e9a0c	input/D0RE2.1_r2.fq.gz
+file	D0RH0.2_r1.fq.gz	FASTQ	1872	b3aa75d0585a989bb25fae252a10b532	input/D0RH0.2_r1.fq.gz
+file	D0RH0.2_r2.fq.gz	FASTQ	1894	c59ebfa4199287bf3911a4c1d6eda71e	input/D0RH0.2_r2.fq.gz
diff --git a/argo-data-submission-wf/tests/input/prod_read_group-fq.v2.tsv b/argo-data-submission-wf/tests/input/prod_read_group-fq.v2.tsv
@@ -0,0 +1,4 @@
+type	submitter_read_group_id	read_group_id_in_bam	submitter_sequencing_experiment_id	platform_unit	is_paired_end	file_r1	file_r2	read_length_r1	read_length_r2	insert_size	sample_barcode	library_name
+read_group	C0HVY.2		SubWf_exp_02_FASTQ_input	74_8a	true	C0HVY.2_r1.fq.gz	C0HVY.2_r2.fq.gz	150	150	298		Pond-147580
+read_group	D0RE2.1		SubWf_exp_02_FASTQ_input	74_8b	true	D0RE2.1_r1.fq.gz	D0RE2.1_r2.fq.gz	150	150	298		Pond-147580
+read_group	D0RH0.2		SubWf_exp_02_FASTQ_input	74_8c	true	D0RH0.2_r1.fq.gz	D0RH0.2_r2.fq.gz	150	150	298		Pond-147580
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		type submitter_sequencing_experiment_id program_id submitter_donor_id submitter_specimen_id submitter_sample_id submitter_matched_normal_sample_id sequencing_center platform platform_model experimental_strategy sequencing_date read_group_count
		sequencing_experiment SubWf_exp_02_FASTQ_input TEST-CA TEST_SUBMITTER_DONOR_ID_zzespofnsa TEST_SUBMITTER_SPECIMEN_ID_zzespofnsaT1 TEST_SUBMITTER_SAMPLE_ID_zzespofnsaT1 TEST_SUBMITTER_SAMPLE_ID_zzespofnsaN1 EXT ILLUMINA HiSeq 2000 WGS 2014-12-12 3