Merge pull request #60 from hugomflavio/to_cran

actel 1.2.1

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: actel
 Title: Acoustic Telemetry Data Analysis
-Version: 1.2.0.9022
+Version: 1.2.1
 Authors@R: person("Hugo", "Flávio", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0002-5174-1197"))
 Description: Designed for studies where animals tagged with acoustic tags are expected
     to move through receiver arrays. This package combines the advantages of automatic sorting and checking 

NEWS.md

@@ -2,7 +2,7 @@
 
 Find out the main highlights of each update.
 
-## Development
+## actel 1.2.1
 
 Fixes:
   * Prevent crash in residency if the overall data period starts in winter time but the data for a given fish starts in summer time.

R/zzz.R

@@ -7,10 +7,10 @@
     packageStartupMessage(paste0("-------------------------------------------------------------\n!!! A NEW VERSION of actel is available! (v.", inst.ver, " -> v.", new.ver[, "ReposVer"], ")\n!!! You should update actel before continuing.\n!!! You can update your packages by running update.packages()\n-------------------------------------------------------------\n"))
 	}
 
-	# temporary warning message
-	ctime <- file.info(find.package(pkgname, libname))$ctime
-	if (difftime(Sys.time(), ctime, units = "day") <= 7)
-	  packageStartupMessage("---------------------------------------------------------------\n!!! IMPORTANT NOTE:\n!!!\n!!! A silent bug was found and fixed in migration() efficiency \n!!! calculations in this release. This bug did not affect all \n!!! datasets, and only impacted the efficiency calculations. \n!!! \n!!! If you have used migration() in actel < 1.2.0, I recommend \n!!! that you run the analyses again and compare the results, \n!!! to ensure these are correct. I am sorry if this caused any\n!!! inconvenience to you.\n!!!\n!!! (This message will stop being displayed in ", round(7 - difftime(Sys.time(), ctime, units = "day"), 0), " days)\n---------------------------------------------------------------\n")
+	# # temporary warning message
+	# ctime <- file.info(find.package(pkgname, libname))$ctime
+	# if (difftime(Sys.time(), ctime, units = "day") <= 7)
+	#   packageStartupMessage("---------------------------------------------------------------\n!!! IMPORTANT NOTE:\n!!!\n!!! A silent bug was found and fixed in migration() efficiency \n!!! calculations in this release. This bug did not affect all \n!!! datasets, and only impacted the efficiency calculations. \n!!! \n!!! If you have used migration() in actel < 1.2.0, I recommend \n!!! that you run the analyses again and compare the results, \n!!! to ensure these are correct. I am sorry if this caused any\n!!! inconvenience to you.\n!!!\n!!! (This message will stop being displayed in ", round(7 - difftime(Sys.time(), ctime, units = "day"), 0), " days)\n---------------------------------------------------------------\n")
 }
 
 utils::globalVariables(c("example.spatial", "example.biometrics", "example.detections", "example.deployments"))

README.md

@@ -69,7 +69,7 @@ Here are some examples:
 
 ## Installing actel 
 
-**CRAN version: 1.2.0**
+**CRAN version: 1.2.1**
 
 actel is available on CRAN. To install the latest stable version, simply run:
 
@@ -95,10 +95,3 @@ After installing, you should read the package vignettes (i.e. the manual), which
 
 
 <sup>* interactive code (i.e. code that expects user input) cannot be tested automatically using codecov and, as such, was excluded from the codecov scope.</sup>
-
- <br/> 
-
-**Disclaimer:** Any bugs found in the dream-realm will not be fixed due to lack of reproducibility!
-
-<sup>Wondering why this is here? see the replies to [this tweet :)](https://twitter.com/bonnie_ahr/status/1327234755608326146) </sup>
-

cran-comments.md

@@ -1,12 +1,10 @@
 ## Comments:
 
-* I have changed my contact email, as I have switched institution.
-
 * The missing package note for MacOS in R 3.6.3 corresponds to a non-essential 
   package for actel and failsafes are in place to prevent function failure 
   in its absense.
 
-* On some of the CRAN checks run for actel 1.1.1, a note is issued regarding 
+* On some of the CRAN checks run for actel 1.2.0, a note is issued regarding 
   svglite being an unused dependency. While actel does not require svglite 
   directly, it is a necessary "suggested" package of ggplot2, and I want 
   to ensure that it is installed.
@@ -16,37 +14,21 @@
 * Windows Server 2019 (on GitHub), R 3.6.3, 4.0.3 and devel
 * Mac OS (on GitHub), R 3.6.3 and 4.0.3
 * Ubuntu 16.04 (on GitHub), R 3.6.3 and 4.0.3
-* local Windows 10, R 4.0.3
+* Local Windows 10, R 4.0.3
 
 
 ## R CMD check results
 
 On Windows Server (R 3.6.3, 4.0.3 and devel), Mac OS (R 4.0.3),
 Ubuntu (R 3.6.3 and 4.0.3) and local Windows 10 (R 4.0.3):
 
-0 errors | 0 warnings | 1 note
-
-* checking CRAN incoming feasibility ... NOTE
-Maintainer: 'Hugo Flávio <[email protected]>'
-
-New maintainer:
-  Hugo Flávio <[email protected]>
-Old maintainer(s):
-  Hugo Flávio <[email protected]>
+0 errors | 0 warnings | 0 notes
 
 ---
 
 On Mac OS (R 3.6.3):
 
-0 errors | 0 warnings | 2 notes
-
-> checking CRAN incoming feasibility ... NOTE
-Maintainer: 'Hugo Flávio <[email protected]>'
-
-New maintainer:
-  Hugo Flávio <[email protected]>
-Old maintainer(s):
-  Hugo Flávio <[email protected]>
+0 errors | 0 warnings | 1 note
 
 > checking package dependencies ... NOTE
   Package suggested but not available for checking: ‘gWidgets2RGtk2’