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Release 1.0.0
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@klamkiew klamkiew released this 26 Apr 08:05
· 49 commits to main since this release
1.0.0
f511831

What's Changed

First full-release of RIBAP.

Since the last pre-release:

  • We have rewritten our ILP modules to be less harddrive-demanding.
    • per default: ILPs and their solutions are not stored anymore. For large datasets, this was waaaay too much.
    • we introduced the flag --keepILPs which can be set in the nextflow run command. Using this won't delete ILPs.
  • We exchanged the module to build the phylogenetic tree of the core genome. Now IQ-Tree2 is used instead of RAxML.
    • if a core gene family has 100% sequence similarity between all possible comparisons, it'll be ignored for the tree calculation
  • RIBAP now supports mamba additionally to conda with -profile mamba (note: you have to install mamba to make this work)
  • Some minor changes are included, like correct naming of output directories and allocating resources on HPC systems.

Full Changelog: 0.7.2...1.0.0

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