corrected remove missing opt

henryjuho · Nov 27, 2018 · e9af2f4 · e9af2f4
1 parent 2c62e3b
commit e9af2f4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/get_out_of_bed.py b/get_out_of_bed.py
@@ -166,7 +166,7 @@ def rm_missing(spp, seq):
 
         spp_seqs = [y[pos] for y in seq]
 
-        if '-' in ''.join(spp_seqs) or '?' in ''.join(spp_seqs):
+        if 'N' in ''.join(spp_seqs) or '?' in ''.join(spp_seqs):
             continue
 
         trimmed_seqs = [trimmed_seqs[i] + spp_seqs[i] for i in range(0, n_spp)]