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@gtonkinhill gtonkinhill released this 12 Dec 06:32
· 74 commits to master since this release
v1.3.2
9abae52

This release fixes minor bugs and adds critical new functionality to generate an automatically filtered core genome alignment. We have found that this filtered alignment leads to superior phylogenetic trees.

  • added new core genome alignment output that uses a Block Mapping and Gathering with Entropy (BMGE) filter to remove genes that are likely to cause issues when reconstructing phylogenies.
  • fixed a bug that created many temporary files when using PRANK for gene alignment.
  • fixed a bug in the extract gene post-processing script
  • updated dependencies
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