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Start specifying data model #72

Merged
merged 20 commits into from
Oct 7, 2022
Merged

Start specifying data model #72

merged 20 commits into from
Oct 7, 2022

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stefpiatek
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Would be good to get your review of the changes to the FSH files as starting to define the structure of the data format

  • Have created some non-complete definitions just to allow all of the required fields to be defined, will address this in a later pull request
  • Have moved unused and files that have errors into another directory to make a clean set of changes that we can be sure are working

stefpiatek and others added 17 commits August 26, 2022 10:59
@stefpiatek
Add SUSHI to project
a413900
@stefpiatek
Add patient level identifiers
76ab769
@stefpiatek
Finish patient definition
d07d067
@stefpiatek
Add organisation
403f6f6
@stefpiatek
Define required fields
d0785a2
@stefpiatek
add todo
e4518ec
@EthelEz
Added sample genomic report sushi files for verification. Some of the…
059b3b3 
…se files are not running on fsh online due to error (out of inexperience with sushi) in the files. For example Patient.fsh and variantDetail.fsh I am studying sushi for better understanding
@EthelEz
Added some of the fsh files Eze have been working on for genomic repo…
6925adf 
…rt IG creation
@EthelEz
Delete gosh-genomic-reporting directory
b978a71
@stefpiatek
Move FSH files with errors to separate sub directory
9ad07b3
@stefpiatek
Rationalise FSH aliases
2e1dbdf
@stefpiatek
Move unused files to specific subdirectory for clarity
3cf8e97
@stefpiatek
Start working on service request definition
61ecfbb
@stefpiatek
Run FSH compilation in CI
ee81efb
@stefpiatek
Work on plan definition and stub out dependencies
f0cc761
@stefpiatek
Start on diagnostic report
4cbb2fd
@stefpiatek
Merge remote-tracking branch 'origin/main' into specify_data_model
83250e7 
# Conflicts:
#	package-lock.json
#	package.json
#	src/fhir/resources.ts
@stefpiatek stefpiatek requested a review from EthelEz October 6, 2022 16:39
@stefpiatek stefpiatek temporarily deployed to test-env October 6, 2022 16:39 Inactive
@stefpiatek stefpiatek temporarily deployed to test-env October 6, 2022 16:41 Inactive
@stefpiatek stefpiatek temporarily deployed to test-env October 6, 2022 16:44 Inactive
@stefpiatek stefpiatek temporarily deployed to test-env October 6, 2022 16:46 Inactive
@EthelEz EthelEz merged commit 2572875 into main Oct 7, 2022
@EthelEz
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EthelEz commented Oct 7, 2022

I am so sorry once again for the delay in response. I would clone the project and run it. Meanwhile, the little I did, was it any helpful?

I updated the sample bundle version 3. I don't know if you've seen it. Attached again.
sample_bundle_v3.json.zip

@stefpiatek stefpiatek deleted the specify_data_model branch October 7, 2022 14:17
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@EthelEz EthelEz EthelEz approved these changes

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@stefpiatek @EthelEz