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updated the manual and matlab toolbox installer with latest code changes
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acp29 committed Jan 22, 2024
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2 changes: 1 addition & 1 deletion docs/copying.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta name="date" content="2024-01-20"/>
<meta name="date" content="2024-01-22"/>
<meta name="generator" content="generate_html 0.3.3" />
<meta name="author" content="Andrew Penn" />
<meta name="description" content="A package for statistical analysis using resampling methods." />
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4 changes: 2 additions & 2 deletions docs/description.json
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{
"generator": "generate_html",
"generator_version": "0.3.3",
"date_generated": "2024-01-20",
"date_generated": "2024-01-22",
"package":
{
"name": "statistics-resampling",
"version": "5.5.5.2",
"version": "5.5.6",
"description": "The statistics-resampling package is an Octave package and Matlab toolbox that can be used to overcome a wide variety of statistics problems using non-parametric resampling methods. In particular, the functions included can be used to estimate bias, uncertainty (standard errors and confidence intervals), prediction error, and test hypotheses (p-values). Variations of the resampling methods are included that improve the accuracy of the statistics for small samples and samples with complex dependence structures.",
"shortdescription": "The statistics-resampling package is an Octave package and Matlab toolbox that can be used to overcome a wide variety of statistics problems using non-parametric resampling methods",
"date": "2024-01-20",
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2 changes: 1 addition & 1 deletion docs/function/boot.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta name="date" content="2024-01-20"/>
<meta name="date" content="2024-01-22"/>
<meta name="generator" content="generate_html 0.3.3" />
<meta name="author" content="Andrew Penn" />
<meta name="description" content="A package for statistical analysis using resampling methods." />
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6 changes: 3 additions & 3 deletions docs/function/boot1way.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta name="date" content="2024-01-20"/>
<meta name="date" content="2024-01-22"/>
<meta name="generator" content="generate_html 0.3.3" />
<meta name="author" content="Andrew Penn" />
<meta name="description" content="A package for statistical analysis using resampling methods." />
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-----------------------------------------------------------------------------
| Comparison | Test # | Ref # | Difference | t | p |
|------------|------------|------------|------------|------------|----------|
| 1 | 2 | 1 | -0.6441 | -1.38 | .234 |
| 1 | 2 | 1 | +0.5623 | +1.08 | .304 |

-----------------------------------------------------------------------------
| GROUP # | GROUP label | N |
Expand Down Expand Up @@ -573,7 +573,7 @@ <h3><a name="8">Demonstration 8</a></h3>
-----------------------------------------------------------------------------
| Comparison | Test # | Ref # | Difference | t | p |
|------------|------------|------------|------------|------------|----------|
| 1 | 2 | 1 | +0.2285 | +0.31 | .633 |
| 1 | 2 | 1 | +0.5653 | +1.23 | .173 |

-----------------------------------------------------------------------------
| GROUP # | GROUP label | N |
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8 changes: 4 additions & 4 deletions docs/function/bootbayes.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta name="date" content="2024-01-20"/>
<meta name="date" content="2024-01-22"/>
<meta name="generator" content="generate_html 0.3.3" />
<meta name="author" content="Andrew Penn" />
<meta name="description" content="A package for statistical analysis using resampling methods." />
Expand Down Expand Up @@ -187,7 +187,7 @@ <h3><a name="1">Demonstration 1</a></h3>

Posterior Statistics:
original bias median stdev CI_lower CI_upper
+184.5 -0.01662 +184.5 1.311 +182.0 +187.2</pre>
+184.5 +0.03166 +184.5 1.296 +182.0 +187.0</pre>
</div>

<h3><a name="2">Demonstration 2</a></h3>
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Posterior Statistics:
original bias median stdev CI_lower CI_upper
+175.5 -0.04541 +175.5 2.433 +170.4 +179.9
+0.1904 +0.0008393 +0.1920 0.08039 +0.03740 +0.3460</pre>
+175.5 -0.07101 +175.4 2.403 +170.6 +179.7
+0.1904 +0.001505 +0.1921 0.07932 +0.04185 +0.3468</pre>
</div>

<p>Package: <a href="../index.html">statistics-resampling</a></p>
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2 changes: 1 addition & 1 deletion docs/function/bootcdf.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta name="date" content="2024-01-20"/>
<meta name="date" content="2024-01-22"/>
<meta name="generator" content="generate_html 0.3.3" />
<meta name="author" content="Andrew Penn" />
<meta name="description" content="A package for statistical analysis using resampling methods." />
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2 changes: 1 addition & 1 deletion docs/function/bootci.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta name="date" content="2024-01-20"/>
<meta name="date" content="2024-01-22"/>
<meta name="generator" content="generate_html 0.3.3" />
<meta name="author" content="Andrew Penn" />
<meta name="description" content="A package for statistical analysis using resampling methods." />
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34 changes: 17 additions & 17 deletions docs/function/bootclust.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta name="date" content="2024-01-20"/>
<meta name="date" content="2024-01-22"/>
<meta name="generator" content="generate_html 0.3.3" />
<meta name="author" content="Andrew Penn" />
<meta name="description" content="A package for statistical analysis using resampling methods." />
Expand Down Expand Up @@ -170,11 +170,11 @@ <h3><a name="1">Demonstration 1</a></h3>
Resampling method: Balanced, bootstrap cluster resampling
Number of resamples: 1999
Confidence interval (CI) type: Expanded bias-corrected and accelerated (BCa)
Nominal coverage (and the percentiles used): 95% (1.2%, 97.4%)
Nominal coverage (and the percentiles used): 95% (1.4%, 97.8%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+29.65 -2.132e-14 +2.584 +23.40 +34.61</pre>
+29.65 -3.197e-14 +2.530 +23.99 +34.63</pre>
</div>

<h3><a name="2">Demonstration 2</a></h3>
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Resampling method: Balanced, bootstrap cluster resampling
Number of resamples: 1999
Confidence interval (CI) type: Expanded bias-corrected and accelerated (BCa)
Nominal coverage (and the percentiles used): 95% (1.1%, 98.8%)
Nominal coverage (and the percentiles used): 95% (1.1%, 98.7%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+29.65 -0.04061 +2.965 +22.61 +35.89</pre>
+29.65 -0.03091 +2.871 +22.86 +35.86</pre>
</div>

<h3><a name="3">Demonstration 3</a></h3>
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Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+171.5 -6.783 +41.77 +96.12 +234.6</pre>
+171.5 -6.427 +40.77 +99.63 +233.2</pre>
</div>

<h3><a name="4">Demonstration 4</a></h3>
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Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+171.5 -9.279 +33.39 +104.3 +215.2</pre>
+171.5 -9.045 +32.84 +107.0 +215.3</pre>
</div>

<h3><a name="5">Demonstration 5</a></h3>
Expand All @@ -285,11 +285,11 @@ <h3><a name="5">Demonstration 5</a></h3>
Resampling method: Balanced, bootstrap cluster resampling
Number of resamples: 1999
Confidence interval (CI) type: Bias-corrected and accelerated (BCa)
Nominal coverage (and the percentiles used): 90% (12.1%, 98.7%)
Nominal coverage (and the percentiles used): 90% (11.7%, 98.6%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+171.5 -6.482 +41.81 +116.1 +261.8</pre>
+171.5 -6.651 +42.42 +113.9 +259.0</pre>
</div>

<h3><a name="6">Demonstration 6</a></h3>
Expand All @@ -314,11 +314,11 @@ <h3><a name="6">Demonstration 6</a></h3>
Resampling method: Balanced, bootstrap cluster resampling
Number of resamples: 1999
Confidence interval (CI) type: Bias-corrected and accelerated (BCa)
Nominal coverage (and the percentiles used): 90% (13.2%, 98.7%)
Nominal coverage (and the percentiles used): 90% (12.1%, 98.5%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+171.5 -9.281 +33.11 +124.3 +230.3</pre>
+171.5 -9.224 +33.08 +121.8 +228.3</pre>
</div>

<h3><a name="7">Demonstration 7</a></h3>
Expand All @@ -344,8 +344,8 @@ <h3><a name="7">Demonstration 7</a></h3>

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+0.02509 -0.001472 +0.2109 -0.3221 +0.3588
-0.03935 +0.004098 +0.1796 -0.3029 +0.2764</pre>
+0.04981 -0.009316 +0.1931 -0.2742 +0.3504
-0.1475 -0.01070 +0.2480 -0.5675 +0.2589</pre>
</div>

<h3><a name="8">Demonstration 8</a></h3>
Expand All @@ -372,8 +372,8 @@ <h3><a name="8">Demonstration 8</a></h3>

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
-0.2870 +0.02354 +0.2232 -0.6160 +0.1008
+0.3348 -0.01790 +0.08561 +0.2548 +0.4826</pre>
-0.004975 -0.01279 +0.1456 -0.2555 +0.2168
+0.1748 -0.03046 +0.4090 -0.6602 +0.7178</pre>
</div>

<h3><a name="9">Demonstration 9</a></h3>
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Resampling method: Balanced, bootstrap cluster resampling
Number of resamples: 1999
Confidence interval (CI) type: Bias-corrected and accelerated (BCa)
Nominal coverage (and the percentiles used): 95% (1.9%, 96.9%)
Nominal coverage (and the percentiles used): 95% (2.1%, 97.1%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+0.7764 -0.02508 +0.1470 +0.3958 +1.001</pre>
+0.7764 -0.02551 +0.1447 +0.4105 +1.000</pre>
</div>

<p>Package: <a href="../index.html">statistics-resampling</a></p>
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50 changes: 25 additions & 25 deletions docs/function/bootknife.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta name="date" content="2024-01-20"/>
<meta name="date" content="2024-01-22"/>
<meta name="generator" content="generate_html 0.3.3" />
<meta name="author" content="Andrew Penn" />
<meta name="description" content="A package for statistical analysis using resampling methods." />
Expand Down Expand Up @@ -223,11 +223,11 @@ <h3><a name="1">Demonstration 1</a></h3>
Number of resamples (outer): 1999
Number of resamples (inner): 0
Confidence interval (CI) type: Expanded bias-corrected and accelerated (BCa)
Nominal coverage (and the percentiles used): 95% (1.4%, 97.3%)
Nominal coverage (and the percentiles used): 95% (1.2%, 96.9%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+29.65 -3.553e-15 +2.551 +23.83 +34.47</pre>
+29.65 -2.487e-14 +2.648 +23.44 +34.48</pre>
</div>

<h3><a name="2">Demonstration 2</a></h3>
Expand All @@ -253,11 +253,11 @@ <h3><a name="2">Demonstration 2</a></h3>
Number of resamples (outer): 1999
Number of resamples (inner): 199
Confidence interval (CI) type: Calibrated percentile
Nominal coverage (and the percentiles used): 95% (1.0%, 97.1%)
Nominal coverage (and the percentiles used): 95% (1.3%, 97.0%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+29.65 -4.263e-14 +2.716 +23.33 +34.52</pre>
+29.65 +5.684e-14 +2.626 +23.90 +34.30</pre>
</div>

<h3><a name="3">Demonstration 3</a></h3>
Expand All @@ -284,11 +284,11 @@ <h3><a name="3">Demonstration 3</a></h3>
Number of resamples (outer): 1999
Number of resamples (inner): 199
Confidence interval (CI) type: Calibrated percentile
Nominal coverage (and the percentiles used): 95% (2.1%, 97.9%)
Nominal coverage (and the percentiles used): 95% (2.0%, 98.4%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+30.86 -0.02051 +2.898 +24.79 +36.89</pre>
+30.86 -0.01205 +3.021 +24.44 +37.24</pre>
</div>

<h3><a name="4">Demonstration 4</a></h3>
Expand Down Expand Up @@ -317,7 +317,7 @@ <h3><a name="4">Demonstration 4</a></h3>

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+171.5 -6.748 +42.83 +95.09 +237.2</pre>
+171.5 -7.227 +43.04 +94.94 +237.2</pre>
</div>

<h3><a name="5">Demonstration 5</a></h3>
Expand All @@ -341,11 +341,11 @@ <h3><a name="5">Demonstration 5</a></h3>
Number of resamples (outer): 1999
Number of resamples (inner): 0
Confidence interval (CI) type: Bias-corrected and accelerated (BCa)
Nominal coverage (and the percentiles used): 90% (11.5%, 98.6%)
Nominal coverage (and the percentiles used): 90% (12.3%, 98.7%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+171.5 -6.543 +41.42 +115.5 +257.3</pre>
+171.5 -6.715 +42.25 +115.8 +262.6</pre>
</div>

<h3><a name="6">Demonstration 6</a></h3>
Expand All @@ -372,11 +372,11 @@ <h3><a name="6">Demonstration 6</a></h3>
Number of resamples (outer): 1999
Number of resamples (inner): 199
Confidence interval (CI) type: Calibrated percentile (equal-tailed)
Nominal coverage (and the percentiles used): 90% (2.7%, 97.3%)
Nominal coverage (and the percentiles used): 90% (2.6%, 97.4%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+171.5 -7.423 +42.23 +87.97 +246.2</pre>
+171.5 -7.245 +43.82 +82.56 +253.3</pre>
</div>

<h3><a name="7">Demonstration 7</a></h3>
Expand All @@ -402,11 +402,11 @@ <h3><a name="7">Demonstration 7</a></h3>
Number of resamples (outer): 1999
Number of resamples (inner): 199
Confidence interval (CI) type: Calibrated percentile
Nominal coverage (and the percentiles used): 90% (11.2%, 99.5%)
Nominal coverage (and the percentiles used): 90% (11.6%, 99.5%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+171.5 -6.892 +45.27 +113.5 +279.5</pre>
+171.5 -6.993 +44.78 +112.5 +273.8</pre>
</div>

<h3><a name="8">Demonstration 8</a></h3>
Expand All @@ -433,8 +433,8 @@ <h3><a name="8">Demonstration 8</a></h3>

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+0.3233 +0.001476 +0.2141 -0.02047 +0.6812
+0.05945 -0.009755 +0.1633 -0.2659 +0.2696</pre>
+0.3635 -0.01033 +0.2492 -0.04451 +0.7691
-0.02674 +0.006657 +0.1881 -0.2890 +0.3360</pre>
</div>

<h3><a name="9">Demonstration 9</a></h3>
Expand All @@ -461,11 +461,11 @@ <h3><a name="9">Demonstration 9</a></h3>
Number of resamples (outer): 1999
Number of resamples (inner): 0
Confidence interval (CI) type: Bias-corrected and accelerated (BCa)
Nominal coverage (and the percentiles used): 95% (0.5%, 93.6%)
Nominal coverage (and the percentiles used): 95% (0.5%, 93.3%)

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
+0.7764 -0.005826 +0.1392 +0.3339 +0.9504</pre>
+0.7764 -0.006143 +0.1361 +0.3130 +0.9472</pre>
</div>

<h3><a name="10">Demonstration 10</a></h3>
Expand Down Expand Up @@ -577,13 +577,13 @@ <h3><a name="10">Demonstration 10</a></h3>

Bootstrap Statistics:
original bias std_error CI_lower CI_upper
-16.69 -0.5178 +2.097 -20.20 -12.24
-11.72 -0.3665 +1.858 -14.92 -7.895
-8.061 -0.2657 +1.771 -11.29 -4.417
+0.1048 +0.005684 +0.09252 -0.07777 +0.2790
+0.01034 +0.0006539 +0.006679 -0.002141 +0.02421
+0.06452 +0.002374 +0.01664 +0.03275 +0.09635
+0.001664 +7.029e-06 +0.0007514 +0.0001521 +0.003055</pre>
-16.69 -0.5174 +2.062 -20.47 -12.55
-11.72 -0.3624 +1.813 -15.18 -8.235
-8.061 -0.2623 +1.707 -11.35 -4.704
+0.1048 +0.005048 +0.09163 -0.07559 +0.2870
+0.01034 +0.0006724 +0.006718 -0.001967 +0.02324
+0.06452 +0.002325 +0.01644 +0.03195 +0.09496
+0.001664 +1.022e-05 +0.0007672 +0.0001076 +0.003142</pre>
</div>

<h3><a name="11">Demonstration 11</a></h3>
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